View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_14 (Length: 528)
Name: NF1308_low_14
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 77 - 269
Target Start/End: Complemental strand, 23097829 - 23097638
Alignment:
| Q |
77 |
catcatcatcatcgatcgtgaaataataatatcaaaaaattgaaaaagcaatgactatgtccacaagtttgtcactagaaccctgccccttccatttgaa |
176 |
Q |
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| T |
23097829 |
catcatcatcatcgatcgtgaaataataatatcaaaaaattgaaaaagcaatgactatgtccacaagtttgtcactagaaccctgccccttccatttgaa |
23097730 |
T |
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| Q |
177 |
atggaagaagcaattctattttcctcgcactcacaccttaacaacttcaatatcaatacccaaacaacataaaatcacacaataacgccgcca |
269 |
Q |
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| T |
23097729 |
atggaagaagcaattctattttcctcgcactcacaccttaacaacttcaatatcaataccc-aacaacataaaatcacacaataacgccgcca |
23097638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 335 - 528
Target Start/End: Complemental strand, 23097572 - 23097379
Alignment:
| Q |
335 |
cccctattagaatctctggcaaccacaatatggaacacacttcgaaaacccgtggtagccgcgatattattaacaggaattctattgactacgtacaatc |
434 |
Q |
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| T |
23097572 |
cccctattagaatctctggcaaccacaatatggaacacacttcgaaaacccgtggtagccgcgatattattaataggaattctattgactacgtacaatc |
23097473 |
T |
|
| Q |
435 |
caaacacatccttagcagcaccatccggaggtagaatgggaggaagtgcattctctaaatcatcttcgtgcaggagttattcggctccatcgcc |
528 |
Q |
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| T |
23097472 |
caaacacgtccttagcagcaccatccggaggtagaatgggaggaagtgcattctctaaatcatcttcgtccaggagttattcggctccatcgcc |
23097379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 335 - 526
Target Start/End: Complemental strand, 11828365 - 11828171
Alignment:
| Q |
335 |
cccctattagaatctctggcaaccacaatatggaacacacttcgaaaacccgtggtagccgcgatattattaacaggaattct---attgactacgtaca |
431 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
11828365 |
cccctattagaatctctcgcaaccacaatatggaacacacttcgaaaacccgcggtagccgcgatattattaataggaattcttctattgactacgtaca |
11828266 |
T |
|
| Q |
432 |
atccaaacacatccttagcagcaccatccggaggtagaatgggaggaagtgcattctctaaatcatcttcgtgcaggagttattcggctccatcg |
526 |
Q |
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| T |
11828265 |
atccaaacacgtccttagcagcaccatctggaggtagaatgggaggaagtgcattctctaaatcatcttcgtccaggagttattcggctccatcg |
11828171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 113 - 269
Target Start/End: Complemental strand, 11828570 - 11828419
Alignment:
| Q |
113 |
aaattgaaaaagcaatgactatgtccacaagtttgtcactagaaccctgccccttccatttgaaatggaagaagcaattctattttcctcgcactcacac |
212 |
Q |
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||||||||||| || |||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
11828570 |
aaattgaaaaaaca-tgactatgtccagaagtttgtcactagaaccctgtaccttccatttgaagtggaagaagcaattctcttttcctcgcactcacac |
11828472 |
T |
|
| Q |
213 |
cttaacaacttcaatatcaatacccaaacaacataaaatcacacaataacgccgcca |
269 |
Q |
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||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11828471 |
cttcagaacttcaatatcaatacc----caacataaaatcacacaataacgccgcca |
11828419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 23097919 - 23097866
Alignment:
| Q |
4 |
atgtcgaataatatattgtttttagaaaataaaaagaatactaaaataccttac |
57 |
Q |
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||||| ||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23097919 |
atgtcaaataaaatattgtttttagaaaataaaaagaataataaaataccttac |
23097866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 99 - 262
Target Start/End: Original strand, 47343681 - 47343838
Alignment:
| Q |
99 |
ataataatatcaaaaaattgaaaaagcaatgactatgtccacaagtttgtcactagaaccctgccccttccatttgaaatggaagaagcaattctatttt |
198 |
Q |
| |
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||||||||||| |||| |||||||| || |||| |||||||| | ||||| |||||||||||| |||||||||||||||||||| || ||||||| |||| |
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| T |
47343681 |
ataataatatccaaaa-ttgaaaaacca-tgaccatgtccaccactttgttactagaaccctgtcccttccatttgaaatggaacaaccaattctctttt |
47343778 |
T |
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| Q |
199 |
cctcgcactcacaccttaacaacttcaatatcaatacccaaacaacataaaatcacacaataac |
262 |
Q |
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|||||||| |||||||| | |||||||||||||||||| ||||||||| |||||||||||| |
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| T |
47343779 |
cctcgcacacacaccttcataacttcaatatcaatacc----caacataaagtcacacaataac |
47343838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 338 - 490
Target Start/End: Original strand, 47343929 - 47344072
Alignment:
| Q |
338 |
ctattagaatctctggcaaccacaatatggaacacacttcgaaaacccgtggtagccgcgatattattaacaggaattctattgactacgtacaatccaa |
437 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||| | | ||||||| |||||| ||||||||||||| | ||||||||||| |
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| T |
47343929 |
ctattagaatccctcgcaaccacaatatggaacacacttcgaaaacccgcgtttgccgcga---tattaataggaattctattg---atgtacaatccaa |
47344022 |
T |
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| Q |
438 |
acacatccttagcagcaccatccggaggtagaatgggaggaagtgcattctct |
490 |
Q |
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|||| |||||||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
47344023 |
acacgtccttagcag---catctggaggtagaattggaggaagatcattctct |
47344072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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