View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_17 (Length: 509)
Name: NF1308_low_17
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 131 - 438
Target Start/End: Complemental strand, 5649985 - 5649677
Alignment:
| Q |
131 |
cccttagaggagaaggtggatggagcttaaaatcacaaggtgcccttaccaaaaatttaagagcttgatgatgatgttcctcatcgacaa-cattaaggt |
229 |
Q |
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| T |
5649985 |
cccttagaggagaaggtggatggagctaaaaatcacaaggtgcccttaccaaaaatttaagagcttgatgatg---ttcctcatcgacaaacattaaggt |
5649889 |
T |
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| Q |
230 |
ctgttcttatatacgttgtttgactactctatcccataatttttaagtacttgaaacataattgtatgtgttaaactgttaattactcattttcctttgt |
329 |
Q |
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| T |
5649888 |
ctgttcttatatatgttgtttgactactctatcccataatttttaagtacttgaaacataattgtatgtgttaaactgttaattactcattttcctttgt |
5649789 |
T |
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| Q |
330 |
aagaatgaaactctttagtttgtgtgtagccttttttgagttatggaatagaaacaaaaattat--gtgtcattagtatg-ttatcttaaaatggtcaat |
426 |
Q |
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| T |
5649788 |
aacaatgaaactctttagtttgtgtgtagccttttttgagttatggaatagaaacaaaaattatgtgtgtcattagtatgtttatcttaaaatggtcaat |
5649689 |
T |
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| Q |
427 |
ggtttgaaaatg |
438 |
Q |
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| T |
5649688 |
ggtttgaaaatg |
5649677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 5650118 - 5650083
Alignment:
| Q |
73 |
ataaaaggggagaattaaaagtttccaatgccattg |
108 |
Q |
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| T |
5650118 |
ataaaaggggagaattaaaagtttccaatgccattg |
5650083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37337855 - 37337780
Alignment:
| Q |
1 |
aatccaaacccatgagtctggctactagccctgggggtttatcacacccttcatcatcatcactgctaattgataa |
76 |
Q |
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| T |
37337855 |
aatccaaacccatgagtctggctactagccctgggggtttatcacacccttcatcatcatcactactaattgataa |
37337780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 35739217 - 35739261
Alignment:
| Q |
319 |
ttttcctttgtaagaatgaaactctttagtttgtgtgtagccttt |
363 |
Q |
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| T |
35739217 |
tttttctttgtaacaatgaaactttatagtttgtgtgtagccttt |
35739261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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