View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_23 (Length: 490)
Name: NF1308_low_23
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 12 - 457
Target Start/End: Complemental strand, 42164566 - 42164124
Alignment:
| Q |
12 |
aattctacattgtttgatatctcacttgattatttaagttaatattaatatttgatatctcacttagttatttaataaaattttaatttgatattttttg |
111 |
Q |
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| T |
42164566 |
aattctacattgtttgatatctcacttgattatttaagttaatattaatatttgatatctcacttagttatttaataaaaatttaatttgatattttttg |
42164467 |
T |
|
| Q |
112 |
atatctagcttaattagttatttatgtgttaatcacttatttgatatattattcttcaaattcaatgattaatatttgtctatttaaaaacattttgctt |
211 |
Q |
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| T |
42164466 |
atatctagcttaattagttatttatgtgttaatcacttatttgatatattattcttcaaattcaatgattaatatttgtctatttaaaaacattttgctt |
42164367 |
T |
|
| Q |
212 |
taataggaagttattttgttttaataaatgttaagttattatttaatggtgttatattttcttgatatgtcattcataggctaatttaacattaggtaaa |
311 |
Q |
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| T |
42164366 |
taataggaagttattttgttttaataaatgttaagttattatttaatggtattatattttcttgatatgtcattcataggctaatttaacattaggtaaa |
42164267 |
T |
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| Q |
312 |
ctcacacttttaattttacgagtagagcctctgaattctacataggttcaatgattttacctagatcattgagtttgacaacattgtttgtagtaatatg |
411 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42164266 |
ctcacacttttaattttacgagtagagtctctgaattctacataggttcaatgattttacctagatcattgagtttgacaacattgttt---gtaatatg |
42164170 |
T |
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| Q |
412 |
catcaaacttatttctattgttgtagattattaatttttaatttaa |
457 |
Q |
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| T |
42164169 |
catcaaacttatttctattgttgtagattattaatttttaatttaa |
42164124 |
T |
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