View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_24 (Length: 468)
Name: NF1308_low_24
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 49 - 462
Target Start/End: Complemental strand, 28403303 - 28402903
Alignment:
| Q |
49 |
ctaacacagtagagttgaatcttgagccacaagaaccatgattggaaaagattataaatttcaacaaaagaaacggttttgaaattttaaccatgattag |
148 |
Q |
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| T |
28403303 |
ctaacacagtagagttgaatcttgagccacaagaaccatgattggaaaagattataaatttcaataaaagaaacggttttgaaattttaaccatgattgg |
28403204 |
T |
|
| Q |
149 |
aaaactcatcaacnnnnnnnnnnnnngaatgaaagtatcataaccttgtgattgtgattagctctttctcttagcattcagaatcagaagaacatagaca |
248 |
Q |
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| T |
28403203 |
aaaactcatcaacaaaaaaccaaaaagaatgaaagcatcataaccttgtgattgtgattagctctttctcttagcattcagaatcagaagaacatagaca |
28403104 |
T |
|
| Q |
249 |
caccaagttgaaactcaagcaaagtttttagaattttcttagaagaacctatgaaatagcggctttttatagccttgtgttggacctttcattaattcca |
348 |
Q |
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| T |
28403103 |
cac-------------aagcaaagttttttgaattttcttagaagaatctatgaaatagcggctttttatagccttgtgttggacctttcattaattcca |
28403017 |
T |
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| Q |
349 |
agcaattcatattagcactcctactttttctaataccactacccatactctattctta-nnnnnnncttcttcacatgacaagaccataatgaatgccac |
447 |
Q |
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| T |
28403016 |
agcaattcatattagcactcctactttttctaata-cactacccatactctattcttatttattttcttcttcacatgacaagaccataatgaatgccac |
28402918 |
T |
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| Q |
448 |
atttgttcatctcac |
462 |
Q |
| |
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|||||||||| |||| |
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| T |
28402917 |
atttgttcatttcac |
28402903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 175 - 368
Target Start/End: Original strand, 28586539 - 28586734
Alignment:
| Q |
175 |
gaatgaaagtatcataaccttgtgattgtgattagctctttctcttagcattcagaatcagaagaacatagacacaccaagttgaaactcaagcaaagtt |
274 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
28586539 |
gaatgaaagcatcataaccttgtgattgtgatcagctctttctcttagcattcagaatcagaagaacatagacacaccaagttgaaactcaagc-aagat |
28586637 |
T |
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| Q |
275 |
tttagaattttcttagaagaacctatgaaata---gcggctttttatagccttgtgttggacctttcattaattccaagcaattcatattagcactc |
368 |
Q |
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| T |
28586638 |
tttagaattttcttagaagaatctatgaaatagcggcggctttttatagccttgtgttggacctttcattaattccaagcccttcatattagcactc |
28586734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 28586468 - 28586516
Alignment:
| Q |
49 |
ctaacacagtagagttgaatcttgagccacaagaaccatgattggaaaa |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28586468 |
ctaacacagtagagttgaatcttgagccacaagaaccatgattggaaaa |
28586516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 28397516 - 28397476
Alignment:
| Q |
220 |
tagcattcagaatcagaagaacatagacacaccaagttgaa |
260 |
Q |
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| T |
28397516 |
tagcattcagaatcagaagaacagggacacgccaagttgaa |
28397476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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