View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_27 (Length: 434)
Name: NF1308_low_27
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 37496409 - 37496016
Alignment:
| Q |
13 |
aatatagtggaaattcagaatggaaaatgtgtgatatcttcaactatttttatgcattgaaacaaacttttatcttatttgttagaaaagaagaagcaaa |
112 |
Q |
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| T |
37496409 |
aatatagtggaaattcagaatggaaaatgtgtgatatcttcaacaatttttatgcattgaaacaaacttttatcttatttgttagaaaagaagaagcaaa |
37496310 |
T |
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| Q |
113 |
tggaaaacaaatcagaatttggtcactcaannnnnnnagcatcacttagatattaatgtcaacaagtatagctatggtggtagtctagagaaaagtgtat |
212 |
Q |
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| T |
37496309 |
tggaaaacaaatcagaatttggtcactcaatttttttagcatcacttagatattaatgtcaacaagtataggtatggtggtagtctagagaaaagtgtat |
37496210 |
T |
|
| Q |
213 |
tcaattcaactctttttatagnnnnnnnaaagataatctgatatatgagatggtatttatcttaccctccatattttgttctgaaatgatatcgactgtt |
312 |
Q |
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| T |
37496209 |
tcaattcaactctttttatagtttttttaaagataatctgatatatgaaatggtatttatcttaccctccatattttgttctgaaatgatatcgactgtt |
37496110 |
T |
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| Q |
313 |
atgcaatttcaatgtgttcattactcgtctcacttataacaaacttcacatatattagcaatagtggttaaccggggtttgatttgtttaattt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37496109 |
atgcaatttcaatgtgttcattactcgtctcacttataacaaacttcacatatattagcaatagtggttaaccggggtttgatttgtttaattt |
37496016 |
T |
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