View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_28 (Length: 434)
Name: NF1308_low_28
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 406
Target Start/End: Complemental strand, 37496412 - 37496016
Alignment:
| Q |
10 |
aataatatagtggaaattcagaatggaaaatgtgtgatatcttcaactatttttatgcattgaaacaaacttttatcttatttgttagaaaagaagaagc |
109 |
Q |
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| T |
37496412 |
aataatatagtggaaattcagaatggaaaatgtgtgatatcttcaacaatttttatgcattgaaacaaacttttatcttatttgttagaaaagaagaagc |
37496313 |
T |
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| Q |
110 |
aaatggaaaacaaatcagaatttggtcactcaannnnnnnagcatcacttagatattaatgtcaacaagtatagctatggtggtagtctagagaaaagtg |
209 |
Q |
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| T |
37496312 |
aaatggaaaacaaatcagaatttggtcactcaatttttttagcatcacttagatattaatgtcaacaagtataggtatggtggtagtctagagaaaagtg |
37496213 |
T |
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| Q |
210 |
tattcaattcaactctttttatagnnnnnnnaaagataatctgatatatgagatggtatttatcttaccctccatattttgttctgaaatgatatcgact |
309 |
Q |
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| T |
37496212 |
tattcaattcaactctttttatagtttttttaaagataatctgatatatgaaatggtatttatcttaccctccatattttgttctgaaatgatatcgact |
37496113 |
T |
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| Q |
310 |
gttatgcaatttcaatgtgttcattactcgtctcacttataacaaacttcacatatattagcaatagtggttaaccggggtttgatttgtttaattt |
406 |
Q |
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| T |
37496112 |
gttatgcaatttcaatgtgttcattactcgtctcacttataacaaacttcacatatattagcaatagtggttaaccggggtttgatttgtttaattt |
37496016 |
T |
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