View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_30 (Length: 432)
Name: NF1308_low_30
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 3807565 - 3807884
Alignment:
| Q |
30 |
ctaatcaactattgattatgaaggtacaaagacatgtttactcatactgtaaaattgaaaactcaagcattactaaaggtaggatgta--ggtcaatgtc |
127 |
Q |
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| T |
3807565 |
ctaatcaactattgattatgaaggtacca-gacatgtttactcatactgtaaaattgaaaactcaagcattactaaaggtaggatgtataggtcaatgtc |
3807663 |
T |
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| Q |
128 |
ttatctcactagtgaaattctcttgatccaacaacttctttatcctttgaattttaatttcttccactatggtgttctatgataataagtaagcaattta |
227 |
Q |
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| T |
3807664 |
ttatctcactagtgaaattctcttgatccaacaacttctttatcctttgaattttaatttcttccactatggtgttctatgataataagtaagcaattta |
3807763 |
T |
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| Q |
228 |
gatagaagataatctaacagccaatgaaatacctaaacacattggacattgaatgcatcatcatcagacaacatttaaaatcagaatacattctaacagc |
327 |
Q |
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| T |
3807764 |
gatagaagataatctaacagccaatgaaatacctaaacacattggacattgattgcatcttcatcagacaacatttaaaatcagaatacattctaacagc |
3807863 |
T |
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| Q |
328 |
taccaacatgaaaaatataat |
348 |
Q |
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| T |
3807864 |
taccaacatgaaaaatataat |
3807884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 3807879 - 3807932
Alignment:
| Q |
380 |
tataatttctcatcaatgtgcatttttaac-aattatcaagcttgaagacggtc |
432 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
3807879 |
tataatttctcatcaatgtgcctttttaacaaattatcaagcttgaagacggtc |
3807932 |
T |
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