View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_34 (Length: 425)
Name: NF1308_low_34
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 5188274 - 5188663
Alignment:
| Q |
7 |
tccaacaatatcttagagggagaccaacccattcgataacttcactattatttttctttcttcttccnnnnnnnnnnctccactattattgttggcatct |
106 |
Q |
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| T |
5188274 |
tccaaaaatatcttagagggagaccaacc-attcgataacttcactattatttttctttcttcttccaaaaaaaaaactccactattattgttggcatct |
5188372 |
T |
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| Q |
107 |
actatttgctaaaagaatatactatatggcatatgcaaggcaacgtacttcagcatgcttatttttatgagaattaagtattccaagtcaattaatatta |
206 |
Q |
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| T |
5188373 |
actatttgctaaaaggatatactatatggcatatgcaaggcaacgtacttcagcatgcttatttttatgagaattaagtattccaagtcaattaatatta |
5188472 |
T |
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| Q |
207 |
tgtcatcggaatattccttgtaccnnnnnnnn-cgtagctgtcattttgatgaataaaataattcatatatactgtataggaagggatttggaatctgca |
305 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5188473 |
tgtcatcggaatattccttgtacctttttttttcgtagctgtcattttgatgaataaaataattcatatatactgtatag-aagggatttggaatctgca |
5188571 |
T |
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| Q |
306 |
tcaaacccttgcgtcgttgtgttgcatgatgaatgaaaaccataataaaataacgaaatcttaactagaggaaacgaatcaatatatatatt |
397 |
Q |
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| T |
5188572 |
tcaaacccttgcgtcgttgtgttgcatgatgaatgaaaaccataataaaataacgaaatcttaactagaggaaacgaatcaatatatatatt |
5188663 |
T |
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