View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1308_low_37 (Length: 420)

Name: NF1308_low_37
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1308_low_37
NF1308_low_37
[»] chr4 (2 HSPs)
chr4 (149-403)||(32387799-32388053)
chr4 (152-258)||(32381674-32381780)
[»] chr2 (3 HSPs)
chr2 (97-154)||(44614502-44614559)
chr2 (97-154)||(44623648-44623705)
chr2 (113-154)||(39422491-39422532)
[»] chr3 (5 HSPs)
chr3 (212-273)||(37634580-37634641)
chr3 (212-273)||(37637494-37637555)
chr3 (212-273)||(37640408-37640469)
chr3 (212-273)||(37645782-37645843)
chr3 (212-273)||(37648695-37648756)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 149 - 403
Target Start/End: Complemental strand, 32388053 - 32387799
Alignment:
Q  149 tctcttaacttcagaatccaagatcacccaatgaagctcgtcgaaatggaaggttcccacaccgttcaaaacgtttatgattcccttgacgttcacgtag 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32388053 tctcttaacttcagaatccaagatcacccaatgaagctcgtcgaaatggaaggttcccacaccgttcaaaacgtttatgattcccttgacgttcacgtag 32387954  T
Q  249 gacaatgcttctctgtcctcgtgactgctgacaaggaacccaagcaatacaaaatggtcgcttccacacgtttcaccaagaccgttcttaccacaactgc 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32387953 gacaatgcttctctgtcctcgtgactgctgacaaggaacccaagcaatacaaaatggtcgcttccacacgtttcaccaagaccgttcttaccacaactgc 32387854  T
Q  349 tgttatctcttacactaacggtaatggccctgcctcacctgttctcccacctgca 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32387853 tgttatctcttacactaacggtaatggccctgcctcacctgttctcccacctgca 32387799  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 32381780 - 32381674
Alignment:
Q  152 cttaacttcagaatccaagatcacccaatgaagctcgtcgaaatggaaggttcccacaccgttcaaaacgtttatgattcccttgacgttcacgtaggac 251  Q
    ||||||||| |||||||| | ||||||||||| ||||| ||| | ||||| ||||||||||| ||||||  ||||||||||||||| |||||||||||||    
T  32381780 cttaacttcggaatccaaaaccacccaatgaaactcgttgaattcgaaggatcccacaccgtccaaaacagttatgattcccttgatgttcacgtaggac 32381681  T
Q  252 aatgctt 258  Q
    |||||||    
T  32381680 aatgctt 32381674  T

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Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 44614559 - 44614502
Alignment:
Q  97 ccttaacctcggtctccttattttctagctctttgcagcatctctcaatatctctctt 154  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44614559 ccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctt 44614502  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 44623705 - 44623648
Alignment:
Q  97 ccttaacctcggtctccttattttctagctctttgcagcatctctcaatatctctctt 154  Q
    ||||||| | ||||||| ||||||||||||||| ||||||  ||||||||||||||||    
T  44623705 ccttaacttgggtctccatattttctagctcttcgcagcacttctcaatatctctctt 44623648  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 39422491 - 39422532
Alignment:
Q  113 cttattttctagctctttgcagcatctctcaatatctctctt 154  Q
    ||||||||| ||||||||||||||  ||||||||||||||||    
T  39422491 cttattttccagctctttgcagcacttctcaatatctctctt 39422532  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 37634641 - 37634580
Alignment:
Q  212 gttcaaaacgtttatgattcccttgacgttcacgtaggacaatgcttctctgtcctcgtgac 273  Q
    |||||||| |||||||| || |||||||||||||| |||||||||| | |||||||||||||    
T  37634641 gttcaaaatgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgac 37634580  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 37637555 - 37637494
Alignment:
Q  212 gttcaaaacgtttatgattcccttgacgttcacgtaggacaatgcttctctgtcctcgtgac 273  Q
    |||||||| |||||||| || |||||||||||||| |||||||||| | |||||||||||||    
T  37637555 gttcaaaatgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgac 37637494  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 37640469 - 37640408
Alignment:
Q  212 gttcaaaacgtttatgattcccttgacgttcacgtaggacaatgcttctctgtcctcgtgac 273  Q
    |||||||| |||||||| || |||||||||||||| |||||||||| | |||||||||||||    
T  37640469 gttcaaaatgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgac 37640408  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 37645843 - 37645782
Alignment:
Q  212 gttcaaaacgtttatgattcccttgacgttcacgtaggacaatgcttctctgtcctcgtgac 273  Q
    |||||||| |||||||| || |||||||||||||| |||||||||| | |||||||||||||    
T  37645843 gttcaaaatgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgac 37645782  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 37648756 - 37648695
Alignment:
Q  212 gttcaaaacgtttatgattcccttgacgttcacgtaggacaatgcttctctgtcctcgtgac 273  Q
    |||||||| |||||||| || |||||||||||||| |||||||||| | |||||||||||||    
T  37648756 gttcaaaatgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgac 37648695  T

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