View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1308_low_38 (Length: 417)

Name: NF1308_low_38
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1308_low_38
NF1308_low_38
[»] chr5 (2 HSPs)
chr5 (1-230)||(17717031-17717255)
chr5 (226-413)||(17731286-17731473)
[»] chr7 (2 HSPs)
chr7 (278-399)||(37068200-37068321)
chr7 (201-287)||(4554301-4554390)
[»] chr1 (3 HSPs)
chr1 (13-131)||(51377306-51377424)
chr1 (201-287)||(20009889-20009978)
chr1 (210-287)||(24195875-24195955)
[»] chr8 (1 HSPs)
chr8 (201-287)||(43265682-43265771)
[»] chr2 (1 HSPs)
chr2 (77-164)||(2948231-2948318)
[»] chr4 (1 HSPs)
chr4 (341-378)||(11945400-11945437)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17717031 - 17717255
Alignment:
Q  1 atagtaatgacatgattgatccggtgatattgaatgatattaatgctagtagcgagtggttatagggagatgaatatcgtgtaggtcaagttgatgttgt 100  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17717031 atagtaatgacaagattgatacggtgatattgaatgatattaatgctagtagcgagtggttatagggagatgaatattgtgtaggtcaagttgatgttgt 17717130  T
Q  101 ctatgataatgatgagtttggttggctagatgttcaagtagcaagtggtgctgctgagcccatagttcaagcaacctccgtcacggcctaaatgttcatg 200  Q
    |||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17717131 ctatgataatgatgagtttggttggctagat-----agtagcaagtggtgctgctgagcccatagttcaagcaacctccgtctcggcctaaatgttcatg 17717225  T
Q  201 ttctaaggcaaaagcaaagaaagtggtaga 230  Q
    ||||||||||||||||||||||||||||||    
T  17717226 ttctaaggcaaaagcaaagaaagtggtaga 17717255  T

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Target: chr5; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 226 - 413
Target Start/End: Original strand, 17731286 - 17731473
Alignment:
Q  226 gtagaaattgatgaatatgacccggagtttgttaattggaaggatgaagaaaaagaggatgagattgaagagaaagaggacaaagaagagtacatggatc 325  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17731286 gtagaaattgatgaatatgacccagagtttggtaattggaaggatgaaaaaaaagaggatgagattgaagagaaagaggacaaagaagagtacatggatc 17731385  T
Q  326 actatagtggtggaagaagtgattatgaagattttcatgattcttgaactttttatttgagttttgatgtttagaacctttgctactc 413  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  17731386 actatagtggtggaagaaatgatgatgaagattttcatgattcttgaactttttatttgagttttgatgtttagtatctttgttactc 17731473  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 399
Target Start/End: Original strand, 37068200 - 37068321
Alignment:
Q  278 aagaggatgagattgaagagaaagaggacaaagaagagtacatggatcactatagtggtggaagaagtgattatgaagattttcatgattcttgaacttt 377  Q
    ||||||| ||| ||||||||||||||||  |||||||| |  || | |||| |||||||||| |||| ||| |||||||||||||||||| |||||||||    
T  37068200 aagaggaagagtttgaagagaaagaggatgaagaagagcatgtgcaccactctagtggtggaggaagcgatgatgaagattttcatgattattgaacttt 37068299  T
Q  378 ttatttgagttttgatgtttag 399  Q
    |||||||| |||||||||||||    
T  37068300 ttatttgacttttgatgtttag 37068321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 4554390 - 4554301
Alignment:
Q  201 ttctaaggcaaaagcaaagaaagtggtagaaattgatgaatatgacccggagtttgtta---attggaaggatgaagaaaaagaggatga 287  Q
    |||||| | ||||| |||||||||||||| | |||| ||||||||  | ||||||||||   |||||  |||||||||||||||||||||    
T  4554390 ttctaaaggaaaaggaaagaaagtggtagtagttgacgaatatgattctgagtttgttactgattggggggatgaagaaaaagaggatga 4554301  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 51377424 - 51377306
Alignment:
Q  13 tgattgatccggtgatattgaatgatattaatgctagtagcgagtggttatagggagatgaatatcgtgtaggtcaagttgatgttgtctatgataatga 112  Q
    |||||||||  |||||  || |||||||||||| ||||||||| ||||||| |||||||||||  |||| |||| ||| ||||||||| |||||| | ||    
T  51377424 tgattgatctagtgatcgtggatgatattaatggtagtagcgaatggttattgggagatgaatgccgtggaggtgaaggtgatgttgtttatgatgacga 51377325  T
Q  113 tgagtttggttggctagat 131  Q
    ||| || ||||||||||||    
T  51377324 tgatttgggttggctagat 51377306  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 20009978 - 20009889
Alignment:
Q  201 ttctaaggcaaaagcaaagaaagtggtagaaattgatgaatatgacccggagtttgtta---attggaaggatgaagaaaaagaggatga 287  Q
    |||||| | ||||| |||||||||||||| | |||| |||||||| || ||||||||||   |||||  |||||||||||||||||||||    
T  20009978 ttctaaaggaaaaggaaagaaagtggtagtagttgacgaatatgatcctgagtttgttactgattggggggatgaagaaaaagaggatga 20009889  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 24195875 - 24195955
Alignment:
Q  210 aaaagcaaagaaagtggtagaaattgatgaatatgacccggagtttgtta---attggaaggatgaagaaaaagaggatga 287  Q
    ||||| |||||||||||||| | |||| |||||||| || ||||||||||   |||||  |||||||||||||||||||||    
T  24195875 aaaaggaaagaaagtggtagtagttgacgaatatgatcctgagtttgttactgattggggggatgaagaaaaagaggatga 24195955  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 43265771 - 43265682
Alignment:
Q  201 ttctaaggcaaaagcaaagaaagtggtagaaattgatgaatatgacccggagtttgtta---attggaaggatgaagaaaaagaggatga 287  Q
    |||||| | ||||| |||||||||||||| | |||| |||||||| || |||||| |||   |||||  |||||||||||||||||||||    
T  43265771 ttctaaaggaaaaggaaagaaagtggtagtagttgacgaatatgatcctgagtttattactgattggggggatgaagaaaaagaggatga 43265682  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 2948231 - 2948318
Alignment:
Q  77 tcgtgtaggtcaagttgatgttgtctatgataatgatgagtttggttggctagatgttcaagtagcaagtggtgctgctgagcccata 164  Q
    ||||| |||||||  ||| ||||| |||||| ||||||| || |||| |||||||||| |||  || ||||||||||| |||||||||    
T  2948231 tcgtgaaggtcaaagtgaggttgtttatgatgatgatgatttaggtttgctagatgttgaagaggcgagtggtgctgccgagcccata 2948318  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 11945437 - 11945400
Alignment:
Q  341 gaagtgattatgaagattttcatgattcttgaactttt 378  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  11945437 gaagtgatgatgaagattttcatgatttttgaactttt 11945400  T

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