View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_40 (Length: 406)
Name: NF1308_low_40
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 46373770 - 46373538
Alignment:
| Q |
18 |
atgaacacattttcatgcatgacccgagtgtcctgacaggtagcccaatgaatcaaggatagactatgacaccatactagaagttgtgggattttagata |
117 |
Q |
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| T |
46373770 |
atgaacacattttcatgcatgacccgagtgtcctgacaggtagcccaatggatcaaggatagactatgacaccatactagaagttgtgggattttagata |
46373671 |
T |
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| Q |
118 |
aatataagagagaaataataagaaatattattatagtgaaatatgcttgatgttgactttatacaaaagactaaatagtaaatactagtctctatttata |
217 |
Q |
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| T |
46373670 |
aatataagagagaaataataagaaatattattatagtgaaatatgcttgatgttgactttatacaaaagactaaatagtaaatactagtctctatttata |
46373571 |
T |
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| Q |
218 |
gtgatacataaactcagtcctaaatcaagaaca |
250 |
Q |
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| T |
46373570 |
gtgatacataaactcagtcctaaatcgagaaca |
46373538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 46373493 - 46373453
Alignment:
| Q |
295 |
ctctacgattataaaccgatcctaggaaataacttgacatac |
336 |
Q |
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| T |
46373493 |
ctctacgattataaaccgatt-taggaaataacttgacatac |
46373453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 391
Target Start/End: Original strand, 5959018 - 5959076
Alignment:
| Q |
333 |
ataccaacagaatttgaagattgcatcttacaatttcaattttcaaagatgaaaatggt |
391 |
Q |
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| T |
5959018 |
ataccaacagaatttgaagattgcatcttacgatttcaattttcaaagatgaaaatggt |
5959076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 2249486 - 2249555
Alignment:
| Q |
125 |
gagagaaataataagaaatattattatagtgaaatatgcttgatgttgactttatacaaaagactaaata |
194 |
Q |
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| T |
2249486 |
gagagaaataataagaaatatcattataatgaaatgagtttgatataaacttaatgcaaaagactaaata |
2249555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 28117559 - 28117514
Alignment:
| Q |
147 |
attatagtgaaatatgcttgatgttgactttatacaaaagactaaa |
192 |
Q |
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| T |
28117559 |
attatagtgaaatatgcttgatattgacttgatacaaaagactaaa |
28117514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Original strand, 3759415 - 3759444
Alignment:
| Q |
139 |
gaaatattattatagtgaaatatgcttgat |
168 |
Q |
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| T |
3759415 |
gaaatattattatagtgaaatatgcttgat |
3759444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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