View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_41 (Length: 405)
Name: NF1308_low_41
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_41 |
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| [»] scaffold1325 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 44804027 - 44803734
Alignment:
| Q |
1 |
taggatattaatcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagttttgtttaattccctgttgcttatgcatggtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44804027 |
taggatattaatcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagttttgtttaattccctgttgcttatgcatggtag |
44803928 |
T |
|
| Q |
101 |
gaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44803927 |
gaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctc |
44803828 |
T |
|
| Q |
201 |
aagggcgtcttacaaaatatcttccctttaggagtaaaatgtgaatatgtacaaataattgtgaaggaagcaaacctgataacactgctacatc |
294 |
Q |
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| T |
44803827 |
aagggcgtcttacaaaatatcttccctttaggagtaaaatgtgaatatgtacaaataattgtgaaggaagcaaacctgataacactgctacatc |
44803734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 44800173 - 44799896
Alignment:
| Q |
12 |
tcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagtt------ttgtttaattccctgttgcttatgca-tggtaggagg |
104 |
Q |
| |
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|||||| |||||||||| ||||| |||||||||||| |||||||| || || |||| |||||||||||||| | ||||||||| |||||||||| |
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| T |
44800173 |
tcttttcctggttttttttattaaatttgtgtgatga-agatatcacaaaaatagttctttctttgtttaattccctatggcttatgcaatggtaggagg |
44800075 |
T |
|
| Q |
105 |
agattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaagg |
204 |
Q |
| |
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|||||||||||||| | |||||||||||||||||| || |||||||||||||||| ||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
44800074 |
agattgagattgataacaaggttctacgagtaggaaatgctatagctgttgtaagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagg |
44799975 |
T |
|
| Q |
205 |
gcgtcttacaaaatatcttccctttaggagtaaaatgtgaatatg--tacaaataattgtgaaggaagcaaacctgata |
281 |
Q |
| |
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||||| ||| || |||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
44799974 |
gcgtcataccaagtatcttccctttgtcagtaaaatgtgaatgtgcatacaagtaattgtgaaggaagcaaacctgata |
44799896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 44797022 - 44796826
Alignment:
| Q |
98 |
taggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
197 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||| || | ||||||||||| |
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| T |
44797022 |
taggaggagattgagattgataccagggttctaagactaggaaaggctgtagctgttctaagcgtggagttgaggaagaaaaaaactggccaagtttttg |
44796923 |
T |
|
| Q |
198 |
ctcaagggcgtcttac---------------aaaatatcttccctttaggagtaaaatgtgaatatgtacaaataattgtgaaggaagcaaacctga |
279 |
Q |
| |
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|||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
44796922 |
ctcaagggcgtcatacaaaatttcttcccctaaaatatcttccccttaagagtaaaatgtgaatatgtacaagtaattgtgaaggaagcaaagctga |
44796826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 44792121 - 44791980
Alignment:
| Q |
104 |
gagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaag |
203 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||| | |||||||||||| | |||||||||||||||| |
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| T |
44792121 |
gagattgagattgatgctagagttttacgaataggaaaggctgtagctgttgtaagcgtggagttcaagaagaaaaagactggacaagtttttgctcaag |
44792022 |
T |
|
| Q |
204 |
ggcgtcttacaaaatatcttccctttaggagtaaaatgtgaa |
245 |
Q |
| |
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|||||| ||| |||||| |||||||| ||||||||||||| |
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| T |
44792021 |
ggcgtcataccaaatatattccctttgtaagtaaaatgtgaa |
44791980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 44783894 - 44783661
Alignment:
| Q |
12 |
tcttttactggttttttgtattagatttgtgtgatgggagatatcataacaacagttt-tgtttaattccctgttgcttatgcatggtaggaggagattg |
110 |
Q |
| |
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|||||| ||||||| | |||||||||||||| ||| |||||||| ||||| |||| | ||||| ||| | | ||||||| || ||||| ||||||| |
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| T |
44783894 |
tcttttcctggtttcatatattagatttgtgtaatga-agatatcacaacaatagttaatttttaactccatatggcttatgtttgataggaagagattg |
44783796 |
T |
|
| Q |
111 |
agattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaagggcgtct |
210 |
Q |
| |
|
|||| || || |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| | ||||||||||||||| || |||| |
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| T |
44783795 |
agatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttgctcatggacgtca |
44783696 |
T |
|
| Q |
211 |
tacaaaatatcttccctttaggagtaaaatgtgaa |
245 |
Q |
| |
|
||| | ||||||| || ||| ||||||||||||| |
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| T |
44783695 |
taccacatatctttccattactagtaaaatgtgaa |
44783661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 44786761 - 44786614
Alignment:
| Q |
98 |
taggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
197 |
Q |
| |
|
||||||||||||||||| |||| || || ||||||||||||||| | |||||||| ||||||||||||| ||||||||||| || | |||| |||||| |
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| T |
44786761 |
taggaggagattgagatcgatggcagagtcctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaaaaactggccaaatttttg |
44786662 |
T |
|
| Q |
198 |
ctcaagggcgtcttacaaaatatcttccctttaggagtaaaatgtgaa |
245 |
Q |
| |
|
|||| ||||||| ||| |||||| | ||||||| ||||||||||||| |
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| T |
44786661 |
ctcaggggcgtcataccaaatatataccctttatcagtaaaatgtgaa |
44786614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 97 - 245
Target Start/End: Complemental strand, 44788440 - 44788292
Alignment:
| Q |
97 |
gtaggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagttttt |
196 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| ||| |||| | |||||||||||||||||||| |||||||||||||| | |||| ||||| |
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| T |
44788440 |
gtaggaggagattgagatcgatgctaaagttctacgagcagggaagggtatggctgttgtaagcgtggagttcaggaagaaaaagactggccaaattttt |
44788341 |
T |
|
| Q |
197 |
gctcaagggcgtcttacaaaatatcttccctttaggagtaaaatgtgaa |
245 |
Q |
| |
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||||| || |||| ||| |||||| || |||||| | ||||||||||| |
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| T |
44788340 |
gctcagggacgtcataccaaatatatttcctttatcactaaaatgtgaa |
44788292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 291 - 400
Target Start/End: Complemental strand, 22042700 - 22042591
Alignment:
| Q |
291 |
catctcagccatattcttgatctattccctttaagtaatgctctccaagagttctagtaagctaggagtatgaacacaaacacttgtatagtgtttttga |
390 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| |
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| T |
22042700 |
catctcagccatattcttgatctcttccctttaagtaatgctctccaagagttctagtaagctaggagcatgaacacaaacacttctttagtgtttttga |
22042601 |
T |
|
| Q |
391 |
agacataaat |
400 |
Q |
| |
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||| |||||| |
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| T |
22042600 |
agatataaat |
22042591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1325 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1325
Description:
Target: scaffold1325; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 1921 - 2006
Alignment:
| Q |
67 |
ttttgtttaattccctgttgcttatgca-tggtaggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagct |
151 |
Q |
| |
|
|||||||||||||||| | ||||||| | ||||||||||||||| |||||||| | | ||||||| ||||||||||||| |||||| |
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|
| T |
1921 |
ttttgtttaattccctatggcttatgtaatggtaggaggagattcagattgataccaaggttctatgagtaggaaaggctgtagct |
2006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 6609101 - 6609145
Alignment:
| Q |
250 |
tacaaataattgtgaaggaagcaaacctgataacactgctacatc |
294 |
Q |
| |
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||||||||||||||||||||| |||||||| | |||||||||||| |
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|
| T |
6609101 |
tacaaataattgtgaaggaagtaaacctgagagcactgctacatc |
6609145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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