View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_44 (Length: 396)
Name: NF1308_low_44
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 4700827 - 4700532
Alignment:
| Q |
5 |
tgtcgaataatatgtgacggaggtcttattcataagagacatttagattaacaaaaatttatgtattcaatctaaattttaaactaaatacatcaattta |
104 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| | ||||||||||||||||| |
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| T |
4700827 |
tgtcaaataatatgtgacagaggtcttattcataagagacatctggattaacaaaaatttatgtattcggtctaaattttgagctaaatacatcaattta |
4700728 |
T |
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| Q |
105 |
tattgatctaaacgtctcttataaaaaagccaggatgaaatatcatattttatcataatttaattgttgatgaactaatagatatgacaaatgattgaat |
204 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4700727 |
tattaatctaaacgtctcttataaaaaagacaggatgaaatatcatattttatcataatttaattgttgatgaactaatagatatgacaaatgattgaat |
4700628 |
T |
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| Q |
205 |
tcg--------nnnnnnngtctatttatagttctaattatttcgtagaatttattaacatacaggttaatgtagtggctcatcaactagctcgaatg |
293 |
Q |
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| T |
4700627 |
tcgtttttttttttttttttctatttatagttctaattatttcgtagaatttattaaca-acgagttaatgtagtggctcatcaactagctcgaatg |
4700532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 4700513 - 4700428
Alignment:
| Q |
280 |
aactagctcgaatggctgcatatacgatttatgctcgtgattttgatgctatacatgatgtatgtagctcaaaagtaagtatgaaa |
365 |
Q |
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|||||||||||||| ||||||| || | |||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
4700513 |
aactagctcgaatgactgcatacacaacttatgctcatgattttgatgatatacatgatgtttgtagctcaaaagtaagtatgaaa |
4700428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 28017990 - 28017938
Alignment:
| Q |
77 |
taaattttaaactaaatacatcaatttatattgatctaaacgtctcttataaa |
129 |
Q |
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||||||||||||||||||||| ||||| ||||||| ||| ||||||||||| |
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| T |
28017990 |
taaattttaaactaaatacattaatttttattgattcaaatatctcttataaa |
28017938 |
T |
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