View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_47 (Length: 390)
Name: NF1308_low_47
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 147 - 379
Target Start/End: Original strand, 46373538 - 46373770
Alignment:
| Q |
147 |
tgttcttgatttaggactgagtttatgtatcactataaatagagactagtatttactatttagtcttttgtataaagtcaacatcaagcatatttcacta |
246 |
Q |
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| T |
46373538 |
tgttctcgatttaggactgagtttatgtatcactataaatagagactagtatttactatttagtcttttgtataaagtcaacatcaagcatatttcacta |
46373637 |
T |
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| Q |
247 |
taataatatttcttattatttctctcttatatttatctaaaatcccacaacttctagtatggtgtcatagtctatccttgattcattgggctacctgtca |
346 |
Q |
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| T |
46373638 |
taataatatttcttattatttctctcttatatttatctaaaatcccacaacttctagtatggtgtcatagtctatccttgatccattgggctacctgtca |
46373737 |
T |
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| Q |
347 |
ggacactcgggtcatgcatgaaaatgtgttcat |
379 |
Q |
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| T |
46373738 |
ggacactcgggtcatgcatgaaaatgtgttcat |
46373770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 46373421 - 46373493
Alignment:
| Q |
29 |
aaatatctcatcatatctttgatattatattagtatgtcaagttatttcctaggatcggtttataatcgtagag |
102 |
Q |
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| T |
46373421 |
aaatatctcatcatatctttgatattatattagtatgtcaagttatttccta-aatcggtttataatcgtagag |
46373493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 28117514 - 28117559
Alignment:
| Q |
205 |
tttagtcttttgtataaagtcaacatcaagcatatttcactataat |
250 |
Q |
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| T |
28117514 |
tttagtcttttgtatcaagtcaatatcaagcatatttcactataat |
28117559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 2249555 - 2249486
Alignment:
| Q |
203 |
tatttagtcttttgtataaagtcaacatcaagcatatttcactataataatatttcttattatttctctc |
272 |
Q |
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| T |
2249555 |
tatttagtcttttgcattaagtttatatcaaactcatttcattataatgatatttcttattatttctctc |
2249486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 3759444 - 3759415
Alignment:
| Q |
229 |
atcaagcatatttcactataataatatttc |
258 |
Q |
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| T |
3759444 |
atcaagcatatttcactataataatatttc |
3759415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 48196698 - 48196754
Alignment:
| Q |
29 |
aaatatctcatcatatctttgatattatatt--agtatgtcaagttatttcctagga |
83 |
Q |
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||||||||||| |||||||||| |||||||| ||||| | |||||||||||||||| |
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| T |
48196698 |
aaatatctcataatatctttgaaattatattcgagtatcttaagttatttcctagga |
48196754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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