View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_48 (Length: 378)
Name: NF1308_low_48
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 78 - 365
Target Start/End: Original strand, 45340841 - 45341128
Alignment:
| Q |
78 |
actggaaagaaacagtgccaccattgactaatggtctaccatcatcgacaaggcagtcattgtaacggaggcgtttgaagagcttagggttgatgagacg |
177 |
Q |
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| T |
45340841 |
actggaaagaaacagtgccaccattgactaatggtctaccatcattgacaaggcagtcattgtaacggaggcgtttgaagagcttagggttgatgagacg |
45340940 |
T |
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| Q |
178 |
tgctgagctgaaccagccacatcgaagatgaatagcagaaatgtcacatccacttacacacatgttcatgatttcaactgtgtatgttggtataccactt |
277 |
Q |
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| T |
45340941 |
tgctgagctgaaccagccacatcgaagatgaatagcagaaatgtcacatccacttacacacatgttcatgatttcaactgtgtatgttggtataccactt |
45341040 |
T |
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| Q |
278 |
gggagtggtgctgttgagccttgattgataacaatatcagatttgctgcattttttgtcaccccatattcggtttggttccaacctct |
365 |
Q |
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| T |
45341041 |
gggagtggtgctgttgagccttgattgataacaatatcagatttgctgcattttttgtccccccatattcggtttggttccaacctct |
45341128 |
T |
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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 653600 - 653665
Alignment:
| Q |
5 |
cattagggtacacaaagttccacactttaatagcaaggctattctcatgttcctccacaggttctg |
70 |
Q |
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| T |
653600 |
cattagggtacacaaagttccacactttaatagcaaggctattctcatgttcctccacaggttctg |
653665 |
T |
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