View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_5 (Length: 793)
Name: NF1308_low_5
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 4232579 - 4232865
Alignment:
| Q |
16 |
ataacaacatataaaagaaacccacgtttgaaaatacaaaacccttggtccttcaagttaaaatcacaaacgatgagccaaatcaacaaatgaagaccat |
115 |
Q |
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| T |
4232579 |
ataacaacatataaaagaaacccacgtttgaaaatacaaaacccttggtccttcaagttaaaatcacaaacgatgagccaaatcaacacatgaagaccat |
4232678 |
T |
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| Q |
116 |
acatgagtacaaaataagagcaacaacaaaatttctaacgttcaagtttgaaggagactaaatagaaaacagaattcaacaacaaaattaaaataaaata |
215 |
Q |
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| T |
4232679 |
acatgagtacaaaataagagcaacaacaaaatttctaacgttcaagtttgaaggagactaaatagaaaacagaattcaacaacaaaattaaaataaaata |
4232778 |
T |
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| Q |
216 |
agagtaacaagcataaacgatgctaaaataacattatatacatgtatattcaaatatgtatcaatcagcacaacagaaaactttagg |
302 |
Q |
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| T |
4232779 |
agagtaacaagcataaacgatgctaaaataacattatatacatgtatattcatatatgtatcaatcagcacaacagaaaactttagg |
4232865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 365 - 697
Target Start/End: Original strand, 4232928 - 4233260
Alignment:
| Q |
365 |
cgatcatcacaatatctaaattcagaataacaattaaacaagcacataaatttcaccagattatcacagcataatcgaataccaaaatcataaacgatta |
464 |
Q |
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| T |
4232928 |
cgatcatcacaatatctaaattcagaataacaattaaacaagcacataaatttcaccagattatcacagcataatcgaataccaaaatcataaacgatta |
4233027 |
T |
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| Q |
465 |
acacgttatcaaaatttagaataacaattaaacaggcacataaatttcatcatgattatcataccataatnnnnnnnnnnnnnnnnnnnnnnctaatttg |
564 |
Q |
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| T |
4233028 |
acacgttatcaaaatttagaataacaattaaacaggcacataaatttcatcatgattatcataccataatcagaaatgaaaacaaaaagaaactaatttt |
4233127 |
T |
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| Q |
565 |
taacgattctgcgtaatcagaaacgaatcggcgaaatcgatatgtgaattagaaacgaaaaaggagatattgaattacctttgaaggatgcgctaaaacc |
664 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4233128 |
taacgattctgcgtaatcagaaatgaatcggcgaaatggatatgtgaattagaaacgaaaaaggagatattgaattacctttgaaggatgcgctaaaacc |
4233227 |
T |
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| Q |
665 |
ctagcagcaaggaagagaatgagagtggagtaa |
697 |
Q |
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| T |
4233228 |
ctagcagcaaggaagagaatgagagtggagtaa |
4233260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 447 - 534
Target Start/End: Original strand, 4232916 - 4233002
Alignment:
| Q |
447 |
caaaatcataaacgattaacacgttatcaaaatttagaataacaattaaacaggcacataaatttcatcatgattatcataccataat |
534 |
Q |
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|||||||||||||||| | ||| |||| ||||| ||||||||||||||||| |||||||||||||| || |||||||| | |||||| |
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| T |
4232916 |
caaaatcataaacgatcatcacaatatctaaattcagaataacaattaaacaagcacataaatttcacca-gattatcacagcataat |
4233002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 643 - 682
Target Start/End: Original strand, 29833800 - 29833839
Alignment:
| Q |
643 |
ctttgaaggatgcgctaaaaccctagcagcaaggaagaga |
682 |
Q |
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| T |
29833800 |
ctttgaaggatgcgctaaaaccctagcagcaaggaagaga |
29833839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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