View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_50 (Length: 375)
Name: NF1308_low_50
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 10366858 - 10366582
Alignment:
| Q |
14 |
agacattttgaatgacactggtttctatatgtcttgtagatcttgagtcagagaattccatggctagtgtttcttcatcgctctgttgcatctccatttc |
113 |
Q |
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| T |
10366858 |
agacattttgaatgacactggtttctagatgtctagtagatcttgagtcagagaattccatggctagtgtttcttcatcgctctgttgcatctccatttc |
10366759 |
T |
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| Q |
114 |
ttcattgcttgtggcctccatcagagagtttcacttgtcagtatatatctgccatgcatgatcaatgatctaaacagcactacatttaactc-taacaca |
212 |
Q |
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| T |
10366758 |
ttcattgcttgtggcctccatcagagagtttcacttgtcagtatatatctgccatgcatgatcaatgatctaaacaacactacatttaactcttaacaca |
10366659 |
T |
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| Q |
213 |
caacatataaatattgaatataatatggtttctaatgtcaacaattaatcaattatgtctatatatagccatcaata |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10366658 |
caacatataaatattgaatataatatggtttctaatgtcaacaattaatcaattatgtctatatatagctatcaata |
10366582 |
T |
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