View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_53 (Length: 369)
Name: NF1308_low_53
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 86 - 358
Target Start/End: Complemental strand, 13505728 - 13505456
Alignment:
| Q |
86 |
aataacaaattcatcgtcaaaaagtttactctcttgaatgtgcaacattgatgaaacataaaatacatcattagaaaagggtcaaatgagaattattagc |
185 |
Q |
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| T |
13505728 |
aataacagattcatcgtcaaaaattttactctcttgaatgtgcgacattgatgaaagataaaatacatcattaaaaaagggtgaaatgagaattattagc |
13505629 |
T |
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| Q |
186 |
tcaaagggaaaatacgtatttgttgcattcatttaaaaaatcatatctgctaaatatattatttgccaatgattatcctttgagacattatcaattaata |
285 |
Q |
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| T |
13505628 |
tcaaagggaaaataaatatttgttgcattcatttaaaaaatcatatctgctaaatatattatttgccaatgattatcctttgcgacattatcaattaata |
13505529 |
T |
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| Q |
286 |
attatcttttgtattaataatcttaagtaactattttatctaatttagcaatctgcacaagagatctatattc |
358 |
Q |
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| T |
13505528 |
attatcttttgtattaataatcttaggtaactattttatctaatttagcaatctgcacaagagatctatattc |
13505456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 94 - 358
Target Start/End: Complemental strand, 2907410 - 2907147
Alignment:
| Q |
94 |
attcatcgtcaaaaagtttactctcttgaatgtgcaacattgatgaaacataaaatacatcattagaaaagggtcaaatgagaattattagctcaaaggg |
193 |
Q |
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||||||||||||||| |||| |||||||||||||| |||||||| || ||||||||||||||||||| ||| | ||||||||||||||||||||||||| |
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| T |
2907410 |
attcatcgtcaaaaaatttattctcttgaatgtgcgacattgatttaagataaaatacatcattagaacaggatgaaatgagaattattagctcaaaggg |
2907311 |
T |
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| Q |
194 |
aaaatacgtatttgttgcattcatttaaaaaatcatatctgctaaatatattatttgccaatgattatcctttgagacattatcaattaataattatctt |
293 |
Q |
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| T |
2907310 |
aaaatacgtatttgttgcattcatttaaaaaattatatcggctaaatatattatttgccaatgattatcctttgagacattgtcaa-taataattatctt |
2907212 |
T |
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| Q |
294 |
ttgtattaataatcttaagtaactattttatctaatttagcaatctgcacaagagatctatattc |
358 |
Q |
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| T |
2907211 |
ttgtattaataatcttaggtaactattttatctaatttagcaatctgcacaagagatctatattc |
2907147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 40798476 - 40798642
Alignment:
| Q |
94 |
attcatcgtcaaaaagtttactctcttgaatgtgcaacattgatgaaacataaaatacatcattagaaaagggtcaaatgagaattattagctcaaaggg |
193 |
Q |
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||||||| || |||| ||||| |||||| ||||| |||||||||| |||||| ||| |||| ||||| ||| ||| |||||||||||||||||| | |
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| T |
40798476 |
attcatcctcgaaaaatttacgctcttgggtgtgcgacattgatgacggataaaacacaacatttgaaaatggtgaaaagagaattattagctcaaa-ga |
40798574 |
T |
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| Q |
194 |
aaaatacgtatttgttgcattcattt---aaaaaatcatatctgctaaatatattatttgccaatgatta |
260 |
Q |
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|||||| |||| |||||||||||||| |||||||| ||||| |||| ||||||||| |||||||||| |
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| T |
40798575 |
aaaataggtatctgttgcattcatttaaaaaaaaatcctatctactaa--atattatttcccaatgatta |
40798642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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