View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_59 (Length: 325)
Name: NF1308_low_59
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 6316538 - 6316321
Alignment:
| Q |
1 |
gatctgaatgtagataactaataaaaccatcggtaataaacaaccttatgttgcaagatatgtacaaaacggtggctcattttttaactaatatggttgg |
100 |
Q |
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| T |
6316538 |
gatctgaatgtagataactaataaaaccatcggtaataaacaaccttatgttgcaagatatgtacaaaacggtggctcattttttaactaatatggttgg |
6316439 |
T |
|
| Q |
101 |
ataaatcattttaattgtgatttatgtgttgatttcatgcctctgccttgagtgtaatgtccattttgtgtatttagtatgatggaggaactagctttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6316438 |
ataaatcattttaattgtgatttatgtgttgatttcatgcctctgccttgagtgtaatgtccattttgtgtatttagtatgatggaggaactagctttac |
6316339 |
T |
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| Q |
201 |
acaaagtattgtgatgat |
218 |
Q |
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|||||||||||||||||| |
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| T |
6316338 |
acaaagtattgtgatgat |
6316321 |
T |
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