View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1308_low_61 (Length: 325)
Name: NF1308_low_61
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_61 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 42662044 - 42662346
Alignment:
| Q |
13 |
aatatcattattagatgtagaatcagcatcatcattatcaacaatcatgaaatgatcaagcattctttgaacacaatcaatatcatggattgtctccatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662044 |
aatatcattattagatgtagaatcagcatcatcattatcaacaatcatgaaatgatcaagcattctttgaacacaatcaatatcatggattgtctccatt |
42662143 |
T |
|
| Q |
113 |
gagtaaccaatgttaggaatcaagagatcttcaagatcagcttcatctaattgaaaaccaattcttttctccaagcttgcacaacaacaagagcttgcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662144 |
gagtaaccaatgttaggaatcaagagatcttcaagatcagcttcatctaattgaaaaccaattcttttctccaagcttgcacaacaacaagagcttgcat |
42662243 |
T |
|
| Q |
213 |
ataaagccatagctgttcttaaacttctaagcaaaaatttagtttgtgttacacccttttcatttggaagcaactcaactatttcttcaatcagattcct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42662244 |
ataaagccatagctgttcttaaacttctaagcaaaaatttagtttgtgttacacccttttcatttggaagcaactcaactatttcttcaatcagattcct |
42662343 |
T |
|
| Q |
313 |
ttg |
315 |
Q |
| |
|
||| |
|
|
| T |
42662344 |
ttg |
42662346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University