View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_66 (Length: 314)
Name: NF1308_low_66
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 29355806 - 29355513
Alignment:
| Q |
9 |
gaagaacatgagactttgaaagaaacacatttcaatgtccctaacaaatcaccagaccaatctaaataggctgagtcataaaagttacattatttcnnnn |
108 |
Q |
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| T |
29355806 |
gaagaacacgagactttgaaagaaacacttttcaatgtccctagcaaaccaccagatcaatctaaataggccgagtcataaaagttacattatttcaaaa |
29355707 |
T |
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| Q |
109 |
nnnnnnnnnngttacttagnnnnnnnnnatcattgaagcaaaatatgtttgagttacataagtgtcatgtgttatcgtgggagccaattaatagtggtta |
208 |
Q |
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| T |
29355706 |
aaaagaaa--gttacttaatttttttttatcattgaagcaaaatatgtttgagttacataagtgtgatgtgttatagtgggagccaattaatagtagtta |
29355609 |
T |
|
| Q |
209 |
tggaaccaagttcgagtttcatacaaactcaccacatgagatgctttaagagattacattatattttgcctttctttttaacgataaccttatatt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
29355608 |
tggaaccaagttcgagtttcatacaaactcaccacatgagatgctttaagagattacgttatattttacctttctttttaacgataaccttatatt |
29355513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 24579948 - 24579848
Alignment:
| Q |
137 |
atcattgaagcaaaatatgtttgagttacataagtgtcatgtgttatcgtgggagccaattaatagtggttatggaaccaagttcgagtttcatacaaac |
236 |
Q |
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||||||| ||||||| ||||||||||| ||||||||| ||||| || ||||||| || |||||| ||| | ||||| ||||||||| |||| | ||||| |
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| T |
24579948 |
atcattggagcaaaaaatgtttgagttgcataagtgtaatgtgacattgtgggagtcacttaatattgggtgtggaatcaagttcgaatttcttgcaaac |
24579849 |
T |
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| Q |
237 |
t |
237 |
Q |
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| |
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| T |
24579848 |
t |
24579848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 26772376 - 26772453
Alignment:
| Q |
159 |
gagttacataagtgtcatgtgttatcgtgggagccaattaatagtggttatggaaccaagttcgagtttcatacaaac |
236 |
Q |
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||||| ||||||||| |||| || ||||||||| |||||||| |||||||||||||||| ||||||||||||||| |
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| T |
26772376 |
gagttgcataagtgtgatgtagaattgtgggagccgcttaatagtagttatggaaccaagtttgagtttcatacaaac |
26772453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 46769699 - 46769763
Alignment:
| Q |
137 |
atcattgaagcaaaatatgtttgagttacataagtgtcatgtgttatcgtgggagccaattaata |
201 |
Q |
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||||||| || |||||||||||||||| ||||||||| || || || |||||||||| |||||| |
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| T |
46769699 |
atcattggagtaaaatatgtttgagttgcataagtgtgatatgacattgtgggagccacttaata |
46769763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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