View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1308_low_67 (Length: 312)
Name: NF1308_low_67
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_67 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 299
Target Start/End: Original strand, 41847180 - 41847449
Alignment:
| Q |
30 |
caaaccatacaattaattagtattattaattatatcactaagttgaaaactcaaaggtaaagggaaatagattagacaaaccatgaagaagagcatgcaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41847180 |
caaaccatacaattaattagtattattaattatatcactaagttgaaaactcaaaggtaaagggcaatagattagacaaaccatgaagaagagcatgcaa |
41847279 |
T |
|
| Q |
130 |
gcttccattggaaagataatcataaaccaaaagcttttcttccttagcataataataagctttaagtctaacaacattaggatgtctaagcttccccaca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41847280 |
gcttccattggaaagataatcataaaccaaaagcttttcttccttagcataataataagctttaagtctaacaacattaggatgtctaagcttccccaca |
41847379 |
T |
|
| Q |
230 |
acatccatatactgttcaaactgattcctatcacaaggattagcatccttaagtctcttaacagcaacag |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41847380 |
acatccatatactgttcaaactgattcctatcacaaggattagcatccttaagtctcttaacagcaacag |
41847449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 103 - 297
Target Start/End: Complemental strand, 26889830 - 26889636
Alignment:
| Q |
103 |
agacaaaccatgaagaagagcatgcaagcttccattggaaagataatcataaaccaaaagcttttcttccttagcataataataagctttaagtctaaca |
202 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| ||||||||||| || | ||||||||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
26889830 |
agactaaccatgaagaagagcatgcaagctcccattggagagataatcatagacaagaagcttttcttccttggcataataataagctctaagtttaaca |
26889731 |
T |
|
| Q |
203 |
acattaggatgtctaagcttccccacaacatccatatactgttcaaactgattcctatcacaaggattagcatccttaagtctcttaacagcaac |
297 |
Q |
| |
|
| ||||| ||| |||||||||| | |||||||||||||||||||| | || |||| |||||||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
26889730 |
atgttagggtgtttaagcttcccaatcacatccatatactgttcaaattcatgcctagcacaaggatttgcatctttaagcctcttgacagcaac |
26889636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University