View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1308_low_70 (Length: 291)

Name: NF1308_low_70
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1308_low_70
NF1308_low_70
[»] chr8 (4 HSPs)
chr8 (29-280)||(5057255-5057506)
chr8 (184-276)||(41444936-41445028)
chr8 (207-276)||(42854668-42854737)
chr8 (184-248)||(25985128-25985192)
[»] chr6 (3 HSPs)
chr6 (207-276)||(5258805-5258874)
chr6 (207-276)||(5631375-5631444)
chr6 (223-276)||(33495765-33495818)
[»] chr3 (4 HSPs)
chr3 (203-276)||(19757542-19757615)
chr3 (194-261)||(44395003-44395070)
chr3 (209-249)||(28398124-28398164)
chr3 (225-268)||(50630001-50630045)
[»] chr1 (2 HSPs)
chr1 (205-271)||(46226965-46227031)
chr1 (207-271)||(32083400-32083464)
[»] chr7 (2 HSPs)
chr7 (187-265)||(20499664-20499742)
chr7 (207-276)||(32630165-32630234)
[»] chr5 (2 HSPs)
chr5 (223-276)||(3394269-3394322)
chr5 (125-169)||(15370792-15370836)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 29 - 280
Target Start/End: Complemental strand, 5057506 - 5057255
Alignment:
Q  29 acattgttggtcttacagttgtacgataaaacatttctttcgatttgaatgctacttttgtatcacatgcagcccttcttcagtccaacaatcccacttg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5057506 acattgttggtcttacagttgtacgataaaacatttctttcgatttgaatgctacttttgtatcacatgcagcccttcttcagtccaacaatcccacttg 5057407  T
Q  129 aattcaatactttacattttctatttctccatcattttgtactgttctactatggacctctaagttagaaatgttttgccttttgctaaacttgcattca 228  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5057406 aattcaatactttacattttctatttctccgtcattttgtactgttctactatggacctctaagttagaaatgttttgccttttgctaaacttgcattca 5057307  T
Q  229 atatactttggtttgcttctactcaggcggaagccatacgcttataagaatt 280  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  5057306 atatactttggtttgcttctactcaggcggaagccatacacttctaagaatt 5057255  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 41444936 - 41445028
Alignment:
Q  184 acctctaagttagaaatgttttgccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 276  Q
    |||||||||||||||||| || ||||||||||||| || ||||| |||||||||   |||||| |||||| |||||||| |||  ||||||||    
T  41444936 acctctaagttagaaatgcttcgccttttgctaaaattacattccatatactttatcttgcttttactcatgcggaagcaatatccttataag 41445028  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 42854668 - 42854737
Alignment:
Q  207 ccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 276  Q
    ||||||||| || || ||||| |||||||  |  |||||||||||||||||||| |||||||||| ||||    
T  42854668 ccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaaaccatacgcttttaag 42854737  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 25985192 - 25985128
Alignment:
Q  184 acctctaagttagaaatgttttgccttttgctaaacttgcattcaatatactttggtttgcttct 248  Q
    ||||||||| |||||||| || |||| ||||||||||| ||||| ||||||| ||  ||||||||    
T  25985192 acctctaagctagaaatgcttcgcctcttgctaaacttacattccatatactctgtcttgcttct 25985128  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 5258805 - 5258874
Alignment:
Q  207 ccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 276  Q
    ||||||||| || || ||||| ||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  5258805 ccttttgctgaagttacattccatatactttgtcttgcttctactcaggcggaagccatacgcttctaag 5258874  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 5631444 - 5631375
Alignment:
Q  207 ccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 276  Q
    ||||||||| || || ||||| ||||||||||  ||||||||||||| |||||| |||||| ||| ||||    
T  5631444 ccttttgctgaagttacattccatatactttgtcttgcttctactcatgcggaaaccatactcttctaag 5631375  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 33495818 - 33495765
Alignment:
Q  223 cattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 276  Q
    ||||| ||||||| ||  |||||||||||||||||||| |||||||||| ||||    
T  33495818 cattccatatactctgtcttgcttctactcaggcggaaaccatacgcttttaag 33495765  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 19757615 - 19757542
Alignment:
Q  203 tttgccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 276  Q
    |||||||||||||||| || ||||| ||||||| ||  ||||||||||| ||||||| ||||||||||| ||||    
T  19757615 tttgccttttgctaaagttacattccatatactctgtcttgcttctactaaggcggatgccatacgcttctaag 19757542  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 44395070 - 44395003
Alignment:
Q  194 tagaaatgttttgccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaag 261  Q
    |||||||| |||||||||||||||| |||||||| ||||||| |   ||||||||||  |||||||||    
T  44395070 tagaaatgctttgccttttgctaaagttgcattccatatactctatcttgcttctacataggcggaag 44395003  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 28398124 - 28398164
Alignment:
Q  209 ttttgctaaacttgcattcaatatactttggtttgcttcta 249  Q
    |||||||||| |||||||| ||||||| |||||||||||||    
T  28398124 ttttgctaaaattgcattccatatactatggtttgcttcta 28398164  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 50630001 - 50630045
Alignment:
Q  225 ttcaatatactttggtttgctt-ctactcaggcggaagccatacg 268  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||    
T  50630001 ttcaatatactttgttttgctttctactcaggcggaggccatacg 50630045  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 46226965 - 46227031
Alignment:
Q  205 tgccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgctt 271  Q
    ||||||||||| || || ||||  ||| |||||| ||||||||||||||||||||| ||||||||||    
T  46226965 tgccttttgctgaagttacatttcataaactttgttttgcttctactcaggcggaaaccatacgctt 46227031  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 32083400 - 32083464
Alignment:
Q  207 ccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgctt 271  Q
    ||||||||| || || ||||| |||||||  |  |||||||||||||||||||| ||||||||||    
T  32083400 ccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaaaccatacgctt 32083464  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 20499742 - 20499664
Alignment:
Q  187 tctaagttagaaatgttttgccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccat 265  Q
    |||||| |||||| | || ||||||||||||| || || || ||||||| |||||| ||||| ||||||| ||||||||    
T  20499742 tctaagctagaaacgcttcgccttttgctaaaattacactccatatactctggttttcttctgctcaggcagaagccat 20499664  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 32630234 - 32630165
Alignment:
Q  207 ccttttgctaaacttgcattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 276  Q
    ||||||||| || || ||||| |||||||  |  |||||||||||||||||||| |||||||||| ||||    
T  32630234 ccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaaaccatacgcttctaag 32630165  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 3394322 - 3394269
Alignment:
Q  223 cattcaatatactttggtttgcttctactcaggcggaagccatacgcttataag 276  Q
    ||||| ||||||| ||  |||||||||||||||||||| |||||||||| ||||    
T  3394322 cattccatatactctgtcttgcttctactcaggcggaaaccatacgcttctaag 3394269  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 15370792 - 15370836
Alignment:
Q  125 cttgaattcaatactttacattttctatttctccatcattttgta 169  Q
    ||||||||||||  |||||||||||||||| ||| ||||||||||    
T  15370792 cttgaattcaatggtttacattttctatttatccgtcattttgta 15370836  T

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