View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_72 (Length: 286)
Name: NF1308_low_72
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_72 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 29 - 286
Target Start/End: Complemental strand, 3708446 - 3708189
Alignment:
| Q |
29 |
gctgggaccagctaggcaccatgttgaagaaacaatggttataaacaccaatgagaatgctgaggacatagttgaggattatgcacaacctcatcggaaa |
128 |
Q |
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| T |
3708446 |
gctgggaccagctacgcaccatgttgaagaaacaatggttataaacaccaatgagaatgctgaggacatagttgaggattatgcacaacctcatcggaaa |
3708347 |
T |
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| Q |
129 |
gcacctattcacaatgaaaagccatgactcactctactgaaaatacttcataataatacaatatatgtttaattacttcacaaacaagctcacttaaagg |
228 |
Q |
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| T |
3708346 |
gcacctattcacaatgaaaagccatgactcactctactaaaaatact--ataataatacaatatatgtttaattacttcacaaacaagctcacttaaagg |
3708249 |
T |
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| Q |
229 |
tactttagtagttttagcctttcgtcaaagtttgtattgtagc--taggatgaagtaaac |
286 |
Q |
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| T |
3708248 |
tactttagtagttttagcctttcgtcaaagtttgtattgtagctataggatgaagtaaac |
3708189 |
T |
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