View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_73 (Length: 285)
Name: NF1308_low_73
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 32388081 - 32388344
Alignment:
| Q |
1 |
gtacttgtaggtctttcctggctccattttgtagagtggctcagcactgttggattttcccatgatgtggactccatcaggtcttcccatggatcggcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32388081 |
gtacttgtaggtctttcctggctccattttgtagagtggctcagcactgttggattttcccatgatgtggactccatcaggtcttcccatggatcggcca |
32388180 |
T |
|
| Q |
101 |
ctgtcaaggaacttttgcaattgagtgtgactctttccgtaccaatcacccataagaacccaatattcgtcagcgggatcagcatatgggacagggatca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32388181 |
ctgtcaaggaacttttgcaattgagtgtgactctttccgtaccaatcacccataagaacccaatattcgtcagcgggatcagcatatgggacagggatca |
32388280 |
T |
|
| Q |
201 |
acaatcggctgtagactctaattccaccgataccaccggcagctctcatgagaccggtagtagg |
264 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32388281 |
acaatcggctgtagactctaattccaccgataccaccggcagctctcatgagaccggtagtagg |
32388344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 37634869 - 37634980
Alignment:
| Q |
126 |
tgtgactctttccgtaccaatcacccataagaacccaatattcgtcagcgggatcagcatatgggacagggatcaacaatcggctgtagactctaattcc |
225 |
Q |
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|||| ||||| |||||||| ||||| || ||||||||||| || || | ||||||||||| || ||||||||||||| || ||| ||| ||||| || |
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| T |
37634869 |
tgtggctcttaccgtaccagtcaccaatgagaacccaatactcatcctcaggatcagcataaggaacagggatcaacagacgactgaagattctaagacc |
37634968 |
T |
|
| Q |
226 |
accgataccacc |
237 |
Q |
| |
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||||| |||||| |
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| T |
37634969 |
accgaaaccacc |
37634980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 37637783 - 37637894
Alignment:
| Q |
126 |
tgtgactctttccgtaccaatcacccataagaacccaatattcgtcagcgggatcagcatatgggacagggatcaacaatcggctgtagactctaattcc |
225 |
Q |
| |
|
|||| ||||| |||||||| ||||| || ||||||||||| || || | ||||||||||| || ||||||||||||| || ||| ||| ||||| || |
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| T |
37637783 |
tgtggctcttaccgtaccagtcaccaatgagaacccaatactcatcctcaggatcagcataaggaacagggatcaacagacgactgaagattctaagacc |
37637882 |
T |
|
| Q |
226 |
accgataccacc |
237 |
Q |
| |
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||||| |||||| |
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| T |
37637883 |
accgaaaccacc |
37637894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 37646071 - 37646182
Alignment:
| Q |
126 |
tgtgactctttccgtaccaatcacccataagaacccaatattcgtcagcgggatcagcatatgggacagggatcaacaatcggctgtagactctaattcc |
225 |
Q |
| |
|
|||| ||||| |||||||| ||||| || ||||||||||| || || | ||||||||||| || ||||||||||||| || ||| ||| ||||| || |
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| T |
37646071 |
tgtggctcttaccgtaccagtcaccaatgagaacccaatactcatcctcaggatcagcataaggaacagggatcaacagacgactgaagattctaagacc |
37646170 |
T |
|
| Q |
226 |
accgataccacc |
237 |
Q |
| |
|
||||| |||||| |
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|
| T |
37646171 |
accgaaaccacc |
37646182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 37648984 - 37649095
Alignment:
| Q |
126 |
tgtgactctttccgtaccaatcacccataagaacccaatattcgtcagcgggatcagcatatgggacagggatcaacaatcggctgtagactctaattcc |
225 |
Q |
| |
|
|||| ||||| |||||||| ||||| || ||||||||||| || || | ||||||||||| || ||||||||||||| || ||| ||| ||||| || |
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|
| T |
37648984 |
tgtggctcttaccgtaccagtcaccaatgagaacccaatactcatcctcaggatcagcataaggaacagggatcaacagacgactgaagattctaagacc |
37649083 |
T |
|
| Q |
226 |
accgataccacc |
237 |
Q |
| |
|
||||| |||||| |
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|
| T |
37649084 |
accgaaaccacc |
37649095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 37651896 - 37652007
Alignment:
| Q |
126 |
tgtgactctttccgtaccaatcacccataagaacccaatattcgtcagcgggatcagcatatgggacagggatcaacaatcggctgtagactctaattcc |
225 |
Q |
| |
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|||| ||||| |||||||| ||||| || ||||||||||| || || | ||||||||||| || ||||||||||||| || ||| ||| ||||| || |
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| T |
37651896 |
tgtggctcttaccgtaccagtcaccaatgagaacccaatactcatcctcaggatcagcataaggaacagggatcaacagacgactgaagattctaagacc |
37651995 |
T |
|
| Q |
226 |
accgataccacc |
237 |
Q |
| |
|
||||| |||||| |
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|
| T |
37651996 |
accgaaaccacc |
37652007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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