View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_74 (Length: 284)
Name: NF1308_low_74
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 26403201 - 26402923
Alignment:
| Q |
1 |
ctaagatggttgccatcgtcgaaatgctgaaaaagcactatgtaagaagggtttatcaactatgtttgaatttttatccactggtttctcttctagttgc |
100 |
Q |
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| T |
26403201 |
ctaagatggttgccatcgtcgaaatgctgaaaaagcactatgtaagaagggtctatcaactatgtttgaatttttatccactggtttctcttctagttgc |
26403102 |
T |
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| Q |
101 |
accatgtgtgtaccactcgttctttttgcgaggtcttgagtttttcctgatcaacaagaaattaaaaatgtg--tgtctcaatgaattaaattaagagac |
198 |
Q |
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| T |
26403101 |
accatgtgtgtaccactcgttctttttgcgagatcttgagtttttcctgatcgacaagaaattaaaaatgtgtatgtctcgatgaattaaattaagagac |
26403002 |
T |
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| Q |
199 |
tcaaattcacctaataatttgtaatagaaaaaacaactcacctgcaatttgacaaccaccactgaattgattcatctca |
277 |
Q |
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| T |
26403001 |
ccaaattcacccaataatttgtaatagaaaaaataactcacctgcaattataccaccacgactgaattggttcttctca |
26402923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 26402816 - 26402588
Alignment:
| Q |
3 |
aagatggttgccatcgtcgaaatgctgaaaaagcactatgtaagaagggtttatcaactatgtttgaatttttatccactggtttctcttctagttgcac |
102 |
Q |
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|||| |||| |||| ||||||||| ||| ||||||| ||| | ||||| || ||||||||||||| ||| ||| | ||| ||||||||| ||||| |
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| T |
26402816 |
aagagggtttccatggtcgaaatgttgacgaagcactgtgtgaaaagggcctaacaactatgtttgattttgtatgcctcagttgctcttctagctgcac |
26402717 |
T |
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| Q |
103 |
catgtgtgtaccactcgttctttttgcgaggtcttgagtttttcctgatcaacaagaaattaaaaatgtgtgtctcaatgaattaaattaagagactcaa |
202 |
Q |
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| T |
26402716 |
catgtccgtaccgaccgttttcattgtgaggttctgtattttttctgataaacaacaaatgaaaaatgtgaatctcaatgaattaaattaagagactcaa |
26402617 |
T |
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| Q |
203 |
attcacctaataatttgtaatagaaaaaa |
231 |
Q |
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||||| | || || || |||||||||||| |
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| T |
26402616 |
attcatcgaaaaaattataatagaaaaaa |
26402588 |
T |
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