View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1308_low_76 (Length: 267)
Name: NF1308_low_76
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_76 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 36041084 - 36041303
Alignment:
| Q |
19 |
tccaacaatatccgaatggaaaacaggttctatgtccttaagcttatgttcattgctaaactcatctcaaccatcacttaatcttaccatatcaaaaaac |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36041084 |
tccaccaatatccgaatggaaaacaggttctatgtccttaagcttatgttcattgctaaactcatctcaaccatcacttaatcttaccatatcaaaaaac |
36041183 |
T |
|
| Q |
119 |
caccaatcccaaaaactcttttttgctattgtggcagattataatatccctatttttctttggacctcaaaaccattcaaacctagcaataaaatatcac |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36041184 |
caccaatcccaaaaactctcttttgctattgtggcagattataatatccctatttttctttggacctcaaaaccattcaaacctagcaataaaatatcac |
36041283 |
T |
|
| Q |
219 |
atgaagaaaccatttcaaat |
238 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36041284 |
atgaagaaaccatttcaaat |
36041303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University