View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_78 (Length: 266)
Name: NF1308_low_78
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 49315374 - 49315119
Alignment:
| Q |
1 |
gctatggaaattgataaagatgctgatgtaaatgttactagtaatacaaatagcaataataatgatgatttgaataagcctttgaaggaggttatttttg |
100 |
Q |
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| T |
49315374 |
gctatggaaattgataaagatactgatgtaaatgttactagtaatacaaatagcaataataatgatgatttgaataagcctttgaaggaggttatttttg |
49315275 |
T |
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| Q |
101 |
tcgatgatgatgataaagaggaaggggagttggaggagggtgagattgatgttgacgacgatacaaattgtgcaattgtcggtggtggtgatagttttga |
200 |
Q |
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| T |
49315274 |
tcgatgatgatgataaagaggaaggggagttggaggagggtgagattgatgttgacgacgatacaaattgtgcaattgttggtggtggtgatagttttga |
49315175 |
T |
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| Q |
201 |
gaatgtttctgaatctgacgtgattggtgttagagatgttttgaagtgtatctctg |
256 |
Q |
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| T |
49315174 |
gaatgtttctgaatctgacgtgattggtgttagagatgttttgaagtgtatttctg |
49315119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 6663256 - 6663208
Alignment:
| Q |
103 |
gatgatgatgataaagaggaaggggagttggaggagggtgagattgatg |
151 |
Q |
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| T |
6663256 |
gatgatgatgaaaaagaggaaggggagttggaggagggtgagattgatg |
6663208 |
T |
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