View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_8 (Length: 560)
Name: NF1308_low_8
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 532
Target Start/End: Original strand, 40821619 - 40822129
Alignment:
| Q |
11 |
cagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgatttga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40821619 |
cagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaataatgatttga |
40821718 |
T |
|
| Q |
111 |
gatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcatttcacta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
40821719 |
gatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttctgaaaatctctatcattttaagaacttaatgttgtttgagtcatttcacta |
40821818 |
T |
|
| Q |
211 |
cttatttaggttatcannnnnnnnnnnnnnnnnnnnncctagaccgtcatttttatttcatgaaatcaagtatgtatcctctcagatctacaagaatcat |
310 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40821819 |
cttatttaggttatca-cttttcttttcttttttttccctagaccgtcatttttatttcatgaaatcaagtatgtatcctctcagatctacaagaatcat |
40821917 |
T |
|
| Q |
311 |
ttctttattcaaaattttcttggtcaggtgccttgtaaccgataaaataatattagttgtacaatgttttcaaaaaccataactttgaatcattcatttt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40821918 |
ttctttattcaaaattttcttggtcaggtgccttgtaaccgataaaataatattagttgtacaatgttttcaaaaaccataactttgaatcattcatttt |
40822017 |
T |
|
| Q |
411 |
ctactcaaagacaacctcatcaaatagtttatcagtatgatcctaaaaattcaatgatcctagaatataaaaactatatatcattttcataaaattataa |
510 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40822018 |
ctactc--agacaacctcatcaaatagtttatcag--------taaaaattcaatgatcctagaatataaaaactatatatcattttcataaaattataa |
40822107 |
T |
|
| Q |
511 |
ctttctgatttgccaatttatt |
532 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40822108 |
ctttctgatttgccaatttatt |
40822129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 303 - 530
Target Start/End: Complemental strand, 20291951 - 20291727
Alignment:
| Q |
303 |
agaatcatttctttattcaaaattttcttggtcaggtgccttgtaaccgataaaataatattagttgtacaatgttttcaaaaaccataactttgaatca |
402 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
20291951 |
agaatcatttctttattcaaatttttcttggtcaggtgctttgtaatctataaaataatattagttgtacaaggttttcaaaaactataactttgaatca |
20291852 |
T |
|
| Q |
403 |
ttcattttctactcaaagacaacctcatcaaatagtttatcagtatgatcctaaaaattcaatgatcctagaatataaaaactatatatcattttcataa |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| || ||||||||||||| ||||||||||||||| |
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| T |
20291851 |
ttcattttctactcaaagacaacctcatcaaatagtttatgagtatgatcctaaacagtcaatgattctggaatataaaaact--atatcattttcataa |
20291754 |
T |
|
| Q |
503 |
aattataactttctgatttgccaattta |
530 |
Q |
| |
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|| ||||||||||| |||||| |||||| |
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| T |
20291753 |
aactataactttct-atttgcaaattta |
20291727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 20292187 - 20292021
Alignment:
| Q |
41 |
acccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgatttgagatttc---cttaaagtcaagagtctaaaa |
137 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| |
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| T |
20292187 |
acccattatatgatcaacaagtagactatgatacaaaaa-aaccactctttcttattaataatgatttgagatttccttcttaacgtcaagagtctaaaa |
20292089 |
T |
|
| Q |
138 |
aatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcatttcact |
209 |
Q |
| |
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||||||| |||||||| ||||| |||| ||| |||| ||||| |||| ||| |||||| ||||||||| |
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|
| T |
20292088 |
aatcacaggtaaatcaaagttctaaaaa----tattatttcaaaaaattaatgttctttgagacatttcact |
20292021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 261 - 459
Target Start/End: Original strand, 20092821 - 20093018
Alignment:
| Q |
261 |
ttttatttcatgaaatcaagtatgtatcctctcagatctacaagaatcatttctttattcaaaattttcttggtcaggtgccttgtaaccgataaaataa |
360 |
Q |
| |
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|||||| |||||||||||| | |||||||| ||| || | |||||||||| |||||| ||| | |||||||||||||||| || | ||||||||| | |
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| T |
20092821 |
ttttatatcatgaaatcaact-tgtatcctgtcacatatttgagaatcatttttttattaaaatatgtcttggtcaggtgcctcgttatcgataaaatta |
20092919 |
T |
|
| Q |
361 |
tattagttgtacaatgttttcaaaaaccataactttgaatcattcattttctactcaaagacaacctcatcaaatagtttatcagtatgatcctaaaaa |
459 |
Q |
| |
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||| |||| | ||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||| || ||| |||||||||||| ||||||||| |
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| T |
20092920 |
tatcagttatctaatgttttcaaaatctataattttgaatcatttattttctactcaaagacaacctcgtctaatgatttatcagtatgttcctaaaaa |
20093018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 431
Target Start/End: Complemental strand, 20296602 - 20296431
Alignment:
| Q |
260 |
tttttatttcatgaaatcaagtatgtatcctctcagatctacaagaatcatttctttattcaaaattttcttggtcaggtgcctt-gtaaccgataaaat |
358 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||| || || |||||||||||||||| ||| | ||| ||||||| ||| |||| ||||||| |
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| T |
20296602 |
tttttatttcattaaatcaact-tgtatcctctcacatatatg-gaatcatttctttatttaaatctgacttagtcaggttcctacgtaattaataaaat |
20296505 |
T |
|
| Q |
359 |
aatattagttgtacaatgttttcaaaaaccataactttgaatcattcattttct-actcaaagacaacctcatc |
431 |
Q |
| |
|
||||| |||||| |||||||| |||||| ||||| ||||||| |||||||| | | ||||||||||||||||| |
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|
| T |
20296504 |
aatatcagttgtctaatgtttttaaaaactataaccttgaatcgttcattttttcattcaaagacaacctcatc |
20296431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 20092587 - 20092660
Alignment:
| Q |
22 |
tttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttatt |
97 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||| | | | | ||||||||| ||||||||||||||||||||| |
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| T |
20092587 |
tttgaacaacacctgaaacac--attatgtgatcaatactaaaagtatgatacataaacaaccactctttcttatt |
20092660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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