View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_81 (Length: 260)
Name: NF1308_low_81
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_81 |
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Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 4186968 - 4186880
Alignment:
| Q |
149 |
ttctatctttctattgggaactttcctactagacagtagcaagaaaaaagattgagcaaacaaattgaacctagctaaccacataccag |
237 |
Q |
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| T |
4186968 |
ttctatctttctattgggaactttcctattagacagtagcaagaaaaaagatcgagcaaacaaattgaacctagctaaacatataccag |
4186880 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 4187080 - 4187023
Alignment:
| Q |
37 |
gaataccagtcacagaaaaactagcaattacaaacaaaaccctctcaccccaattagg |
94 |
Q |
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| T |
4187080 |
gaataccagtcacagaaaaactagcaattacaaacaaaactctctcaccccaattagg |
4187023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 4196112 - 4196055
Alignment:
| Q |
37 |
gaataccagtcacagaaaaactagcaattacaaacaaaaccctctcaccccaattagg |
94 |
Q |
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|||| ||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
4196112 |
gaatcccagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattagg |
4196055 |
T |
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