View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_85 (Length: 251)
Name: NF1308_low_85
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_85 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 14132394 - 14132173
Alignment:
| Q |
30 |
ctcatagtacttttttcttggtttagtcaatacagataaataggtatatcaaagagtttatttgacaggaaccatacacaagtcaagtagttcaattaca |
129 |
Q |
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| T |
14132394 |
ctcatagtacttttttcttggtttagtcaatacagataaataggtatatcaaagagtttatttgacaggaaccatacacaagtcaagtagttcaattaca |
14132295 |
T |
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| Q |
130 |
ccattaggttgtattattattcataaataatgctacttagaagcaaacatatcatatcatagcagatcttattcnnnnnnngtaccaagatcggatttat |
229 |
Q |
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| T |
14132294 |
ccattaggttgtattattattcataaataatgctacttagaagcaaacatatcatatcatagcagatcttattctttttttgtaccaagatcggatttat |
14132195 |
T |
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| Q |
230 |
attgtacatcatatttaatact |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
14132194 |
attgtacatcatatttaatact |
14132173 |
T |
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