View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_86 (Length: 251)
Name: NF1308_low_86
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_86 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5056946 - 5056704
Alignment:
| Q |
1 |
taagtcctacgacatcgtcaggggagatatccataccaaatctacattctgagctggatttattcaaggtatcataacttttacttgtctcctcatcttt |
100 |
Q |
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| T |
5056946 |
taagtcctacgacatcgtcaggggagatatccataccaaatctacattttgagctggatttattcaaggcatcataatttttacttgtctcctcatcttt |
5056847 |
T |
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| Q |
101 |
actcctctctctcttgccatgtgaggaccttgtaccgatttctaactcaccagaacatttttggaaatcactcattgttggcttctcaatgcagtgatcc |
200 |
Q |
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| T |
5056846 |
actcctctctctcttgccatgtgaggaccttgtaccgatttctaactcacgagaacatttttggaaatcactcatcgttggcttctcactgcagtgatcc |
5056747 |
T |
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| Q |
201 |
cttaaattgattttgtccgcaaaagctacatgatcttcatatc |
243 |
Q |
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| T |
5056746 |
cttaaattgattttgtccgcaaaagctacatgatcttcatatc |
5056704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 5179343 - 5179432
Alignment:
| Q |
138 |
atttctaactcaccagaacatttttggaaatcactcattgttggcttctcaatgcagtgatcccttaaattgattttgtccgcaaaagct |
227 |
Q |
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| T |
5179343 |
atttctgactcaccataacattttcggacatcactcatttccagcttctcagtgtaatgatcccttaagttgattttgtctacaaaagct |
5179432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 244
Target Start/End: Original strand, 5185521 - 5185617
Alignment:
| Q |
149 |
accagaacatttttggaaatcactcattgttggcttctcaatgcagtgatccc-ttaaattgattttgtccgcaaaagctacatgatcttcatatca |
244 |
Q |
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|||| |||||||||||| || ||||||| |||||||||||||||||||| |||| |||||||| || |||||||| |||||||||| ||||| |
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| T |
5185521 |
accataacatttttggatataactcatttccaacttctcaatgcagtgatccctttaagttgattttttctacaaaagctgcatgatcttcgtatca |
5185617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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