View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_89 (Length: 251)
Name: NF1308_low_89
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_89 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 53819876 - 53819654
Alignment:
| Q |
1 |
cctgaattggttagaaatgaatttgaatgaacagtatgttgaatttatgcataacattaacatatatatacagcttgtaaaaggatcacagttnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53819876 |
cctgaattggttagaaatgaatttgaatgaacagtatgttgaatttatgcataacattaacatatatatacagcttgtaaaaggatcacagttaaaaaaa |
53819777 |
T |
|
| Q |
101 |
cggttcccatatttattgcatgagggggtcttctagtttgatcaaaattgttctcattatttttgcccaaaatactccatgggaagctagaaattaatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53819776 |
cggttcccatatttattgcatgagggggtcttctagtttgatcaaaattgttctcattatttttgcccaaaatactccatgggaagctagaaattaatcc |
53819677 |
T |
|
| Q |
201 |
ttctaaggtatcgagatctattt |
223 |
Q |
| |
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||||||||||| || |||||||| |
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| T |
53819676 |
ttctaaggtattgacatctattt |
53819654 |
T |
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