View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1308_low_93 (Length: 251)
Name: NF1308_low_93
Description: NF1308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1308_low_93 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 32387531 - 32387768
Alignment:
| Q |
14 |
aggtgaggtcgtattggaaaaccttgttagcaacaccatagtattcagcaagcttgagtggggtttcatcgtcctcgtgggaaactccgttaagagtata |
113 |
Q |
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| T |
32387531 |
aggtgaggtcgtattggaaaaccttgttagcaacaccatagtattcagcaagcttgagtggggtttcatcgtcctcgtgggaaactccgttaagagtata |
32387630 |
T |
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| Q |
114 |
acgaagctttccatcaatgttaaaaggattgttaacgagcttgatggtacgggtgatgttgatctgtccgtaatggtaagaaccttgaggattgggccta |
213 |
Q |
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| T |
32387631 |
acgaagctttccatcaatgttaaaaggattgttaacgagcttgatggtacgggtgatgttgatctgtccgtaatggtaagaaccttgaggattgggccta |
32387730 |
T |
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| Q |
214 |
gcagcactagcggttaagttccagcggaaagaacgaac |
251 |
Q |
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| T |
32387731 |
gcagcactagcggttaagttccagcggaaagaacgaac |
32387768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 32381390 - 32381495
Alignment:
| Q |
143 |
tgttaacgagcttgatggtacgggtgatgttgatctgtccgtaatggtaagaaccttgaggattgggcctagcagcactagcggttaagttccagcggaa |
242 |
Q |
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| T |
32381390 |
tgttaatgagcttaacggtacgggtgatgttgatctgaccgtaatggtaagaaccttgtgggttgggcctagcagcactagcggtcaagttccaacggaa |
32381489 |
T |
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| Q |
243 |
agaacg |
248 |
Q |
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| T |
32381490 |
agaacg |
32381495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 37634312 - 37634410
Alignment:
| Q |
144 |
gttaacgagcttgatggtacgggtgatgttgatctgtccgtaatggtaagaaccttgaggattgggcctagcagcactagcggttaagttccagcggaa |
242 |
Q |
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| T |
37634312 |
gttaacaaacttgattgtgcgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaa |
37634410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 37637226 - 37637324
Alignment:
| Q |
144 |
gttaacgagcttgatggtacgggtgatgttgatctgtccgtaatggtaagaaccttgaggattgggcctagcagcactagcggttaagttccagcggaa |
242 |
Q |
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| T |
37637226 |
gttaacaaacttgattgtgcgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaa |
37637324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 37640140 - 37640238
Alignment:
| Q |
144 |
gttaacgagcttgatggtacgggtgatgttgatctgtccgtaatggtaagaaccttgaggattgggcctagcagcactagcggttaagttccagcggaa |
242 |
Q |
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| T |
37640140 |
gttaacaaacttgattgtgcgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaa |
37640238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 37645514 - 37645612
Alignment:
| Q |
144 |
gttaacgagcttgatggtacgggtgatgttgatctgtccgtaatggtaagaaccttgaggattgggcctagcagcactagcggttaagttccagcggaa |
242 |
Q |
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| T |
37645514 |
gttaacaaacttgattgtgcgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaa |
37645612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 37648427 - 37648525
Alignment:
| Q |
144 |
gttaacgagcttgatggtacgggtgatgttgatctgtccgtaatggtaagaaccttgaggattgggcctagcagcactagcggttaagttccagcggaa |
242 |
Q |
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| T |
37648427 |
gttaacaaacttgattgtgcgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaa |
37648525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 37651339 - 37651437
Alignment:
| Q |
144 |
gttaacgagcttgatggtacgggtgatgttgatctgtccgtaatggtaagaaccttgaggattgggcctagcagcactagcggttaagttccagcggaa |
242 |
Q |
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| T |
37651339 |
gttaacaaacttgattgtgcgggtaatgttgatctgaccgtaatggtaagatccctgagggttgggtcttgcagcagaagcggttaagttccaacggaa |
37651437 |
T |
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