View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309-Insertion-2 (Length: 260)
Name: NF1309-Insertion-2
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 34662352 - 34662103
Alignment:
| Q |
7 |
atagcatgtatggcatatctaaaagctccataagcttcttcataaatactagtttgacaaacaattagtagaattccataatcgacaatgttttgcttag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34662352 |
atagcatgtatggcatatctaaaagctccataagcttcttcataaatactagtttgacaaacaattagtagaattccataatcgacaatgttttgcttag |
34662253 |
T |
|
| Q |
107 |
ttgatttagcatatgattgaatatccatatcacgagagatggtatcttccacatatctgtgaaggaagtttttgaagccggatgatccttcctttgtgct |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34662252 |
ttgatttagcatatgattgaatatccatatcacgagagatggtatcttccatatatctgtgaaggaagtttttgaagccggatgatccttcctttgtgct |
34662153 |
T |
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| Q |
207 |
ctcttctatttgctccttttctatatttttctcttatctatgaggtctat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34662152 |
ctcttctatttgctccttttctatatttttctcttatctatgaggtctat |
34662103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 26956251 - 26956141
Alignment:
| Q |
7 |
atagcatgtatggcatatctaaaagctccataagcttcttcataaatactagtttgacaaacaattagtagaattccataatcgacaatgttttgcttag |
106 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||||||| |||| |
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| T |
26956251 |
atagcatgtatggcatatctaaaaactccataagcttcttcagaaattctagtttgacaaccaattagtagaattccactatcgacaatgttttccttaa |
26956152 |
T |
|
| Q |
107 |
ttgatttagca |
117 |
Q |
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||||| ||||| |
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| T |
26956151 |
ttgatgtagca |
26956141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 26881911 - 26881787
Alignment:
| Q |
124 |
tgaatatccatatcacgagagatggtatcttccacatatctgtgaaggaagtttttgaagcc---ggatgatccttcctttgtgctctcttctatttgct |
220 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||||| |||| ||| |
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| T |
26881911 |
tgaatatccatatcacgagagt--gtatcttccacatatatgtgaagcatgtttttgaagcatgaggatgatccttcctttgtgctctcttatattagct |
26881814 |
T |
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| Q |
221 |
ccttttctatatttttctcttatctat |
247 |
Q |
| |
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| |||||||||||||||||| |||||| |
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| T |
26881813 |
cattttctatatttttctctcatctat |
26881787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 26955592 - 26955529
Alignment:
| Q |
119 |
atgattgaatatccatatcacgagagatggtatcttccacatatctgtgaaggaagtttttgaa |
182 |
Q |
| |
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||||||||||||||||| ||||| ||| |||||||| ||||| |||||||||||||||||||| |
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| T |
26955592 |
atgattgaatatccataccacgaaagacggtatctttcacattgctgtgaaggaagtttttgaa |
26955529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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