View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1309-Insertion-3 (Length: 277)

Name: NF1309-Insertion-3
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1309-Insertion-3
NF1309-Insertion-3
[»] chr4 (21 HSPs)
chr4 (7-277)||(27131626-27131896)
chr4 (67-124)||(27131840-27131897)
chr4 (55-119)||(25260527-25260591)
chr4 (49-107)||(22402389-22402447)
chr4 (64-114)||(27131017-27131067)
chr4 (51-115)||(7422160-7422224)
chr4 (214-268)||(27131013-27131067)
chr4 (66-124)||(32754601-32754659)
chr4 (57-102)||(55575095-55575140)
chr4 (64-107)||(30108077-30108120)
chr4 (64-102)||(9018880-9018918)
chr4 (63-101)||(41052607-41052645)
chr4 (59-101)||(43397111-43397153)
chr4 (61-127)||(49477691-49477757)
chr4 (66-104)||(51238012-51238050)
chr4 (68-114)||(56008711-56008757)
chr4 (53-106)||(27130759-27130811)
chr4 (57-105)||(1678682-1678730)
chr4 (60-108)||(6932646-6932694)
chr4 (63-107)||(31215042-31215086)
chr4 (49-105)||(43978391-43978447)
[»] chr6 (17 HSPs)
chr6 (7-277)||(2468426-2468696)
chr6 (67-124)||(2468640-2468697)
chr6 (64-114)||(2467817-2467867)
chr6 (214-268)||(2467813-2467867)
chr6 (50-112)||(16295529-16295591)
chr6 (65-114)||(19794891-19794940)
chr6 (51-103)||(7381305-7381357)
chr6 (61-109)||(34443051-34443099)
chr6 (57-112)||(10338610-10338664)
chr6 (76-106)||(29219675-29219705)
chr6 (59-113)||(29235954-29236008)
chr6 (49-110)||(1960324-1960385)
chr6 (53-106)||(2467559-2467611)
chr6 (67-119)||(1960642-1960694)
chr6 (61-105)||(4382857-4382901)
chr6 (53-105)||(32931490-32931542)
chr6 (63-103)||(34406440-34406480)
[»] chr8 (11 HSPs)
chr8 (49-127)||(9696021-9696099)
chr8 (50-105)||(29651755-29651810)
chr8 (82-128)||(10319306-10319352)
chr8 (55-139)||(5739565-5739649)
chr8 (54-106)||(14619007-14619059)
chr8 (63-106)||(3943757-3943800)
chr8 (61-116)||(16330978-16331033)
chr8 (70-128)||(11203226-11203284)
chr8 (57-115)||(29418107-29418165)
chr8 (54-119)||(6501489-6501553)
chr8 (50-115)||(10440371-10440436)
[»] chr2 (13 HSPs)
chr2 (68-128)||(30289795-30289855)
chr2 (64-119)||(5453704-5453759)
chr2 (60-108)||(31095148-31095196)
chr2 (56-117)||(22556234-22556296)
chr2 (49-110)||(35198227-35198287)
chr2 (49-101)||(8518044-8518096)
chr2 (55-119)||(39459778-39459841)
chr2 (71-110)||(15804120-15804159)
chr2 (64-114)||(32915855-32915905)
chr2 (61-102)||(39941300-39941341)
chr2 (61-139)||(3103530-3103607)
chr2 (57-101)||(17386489-17386533)
chr2 (61-93)||(22877112-22877144)
[»] scaffold0001 (1 HSPs)
scaffold0001 (50-105)||(398645-398700)
[»] chr3 (11 HSPs)
chr3 (50-127)||(26643275-26643351)
chr3 (59-119)||(42065121-42065181)
chr3 (50-118)||(18871363-18871430)
chr3 (70-106)||(28286906-28286942)
chr3 (66-102)||(28987969-28988005)
chr3 (54-105)||(53791953-53792003)
chr3 (68-118)||(43033119-43033169)
chr3 (50-108)||(49636823-49636880)
chr3 (55-128)||(14032904-14032977)
chr3 (54-106)||(36895368-36895420)
chr3 (61-101)||(42974825-42974865)
[»] chr5 (13 HSPs)
chr5 (65-125)||(29587668-29587728)
chr5 (60-126)||(34806153-34806219)
chr5 (61-95)||(38685306-38685340)
chr5 (60-112)||(10948770-10948822)
chr5 (59-111)||(13398347-13398399)
chr5 (56-106)||(39828473-39828522)
chr5 (61-106)||(18542218-18542263)
chr5 (53-106)||(27249570-27249622)
chr5 (50-103)||(28322251-28322303)
chr5 (71-128)||(28735830-28735886)
chr5 (54-105)||(40205593-40205641)
chr5 (58-106)||(12976657-12976705)
chr5 (50-102)||(14314900-14314952)
[»] chr7 (9 HSPs)
chr7 (55-126)||(3724043-3724113)
chr7 (63-105)||(438688-438730)
chr7 (50-100)||(25280404-25280454)
chr7 (70-128)||(953681-953739)
chr7 (68-106)||(2811268-2811306)
chr7 (52-102)||(34395025-34395075)
chr7 (53-106)||(1741085-1741137)
chr7 (54-102)||(10893870-10893917)
chr7 (54-98)||(39625667-39625711)
[»] chr1 (6 HSPs)
chr1 (61-104)||(16567303-16567346)
chr1 (61-119)||(26462653-26462710)
chr1 (50-108)||(46632009-46632067)
chr1 (65-106)||(2445459-2445500)
chr1 (61-101)||(303693-303733)
chr1 (62-106)||(10042298-10042342)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 27131626 - 27131896
Alignment:
Q  7 agtagagacacttcagattgaaggcgaattgtgtgtccacaaaacacgacaccaacacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27131626 agtagagacacttcagattgaaggcgaattgtgtgtccacaaaacacgacaccaacacatgtggttacattcaattacttccattttcttaaattattac 27131725  T
Q  107 caatgtctacgtgccagtgtcggtgctttatagaacaaaaacaacagcagcagcagcaaacaagccatgtactcatgtatttagtgtctcacattgacac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27131726 caatgtctacgtgccagtgtcggtgctttatagaacaaaaacaacagcagcagcagcaaacaagccatgtactcatgtatttagtgtctcacattgacac 27131825  T
Q  207 atataacaactcacgtggttacactcaattacttccaatttcttaaatcattaccaatgtctacgtgccag 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27131826 atataacaactcacgtggttacactcaattacttccaatttcttaaatcattaccaatgtctacgtgccag 27131896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 27131840 - 27131897
Alignment:
Q  67 gtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagt 124  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||    
T  27131840 gtggttacactcaattacttccaatttcttaaatcattaccaatgtctacgtgccagt 27131897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 25260591 - 25260527
Alignment:
Q  55 acaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtg 119  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||||||||| | |||| ||||||    
T  25260591 acacctacacatttggttacatttaattacttccattttcttaaattattatccatgtttacgtg 25260527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 22402447 - 22402389
Alignment:
Q  49 aacacgacaccaacacatgtggttacattcaattacttccattttcttaaattattacc 107  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||| || ||||||||    
T  22402447 aacacgacaccgacacatgtggttacattcaatcacttctattttctcaatttattacc 22402389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 27131017 - 27131067
Alignment:
Q  64 catgtggttacattcaattacttccattttcttaaattattaccaatgtct 114  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||||||||    
T  27131017 catgtggttacactcaattactttcattgtcttaaattattaccaatgtct 27131067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 7422224 - 7422160
Alignment:
Q  51 cacgacaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtcta 115  Q
    |||||||||||||||| |  ||||||||||| ||||| ||||||| |||||||||| ||||||||    
T  7422224 cacgacaccaacacatataattacattcaatcacttctattttctcaaattattacaaatgtcta 7422160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 27131013 - 27131067
Alignment:
Q  214 aactcacgtggttacactcaattacttccaatttcttaaatcattaccaatgtct 268  Q
    |||||| |||||||||||||||||||| || | |||||||| |||||||||||||    
T  27131013 aactcatgtggttacactcaattactttcattgtcttaaattattaccaatgtct 27131067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 32754659 - 32754601
Alignment:
Q  66 tgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagt 124  Q
    |||||||||||||||| |||| |||||||||||| |||||| | |||||||||| ||||    
T  32754659 tgtggttacattcaatcactttcattttcttaaactattacaagtgtctacgtgtcagt 32754601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 55575095 - 55575140
Alignment:
Q  57 accaacacatgtggttacattcaattacttccattttcttaaatta 102  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  55575095 accaacacatctggttacattcaattacttctattttctcaaatta 55575140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 30108077 - 30108120
Alignment:
Q  64 catgtggttacattcaattacttccattttcttaaattattacc 107  Q
    |||||| |||| |||||||||||||||||||| |||||||||||    
T  30108077 catgtgattacgttcaattacttccattttctcaaattattacc 30108120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 9018880 - 9018918
Alignment:
Q  64 catgtggttacattcaattacttccattttcttaaatta 102  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  9018880 catgtggttacattcaattactttcattttctcaaatta 9018918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 41052645 - 41052607
Alignment:
Q  63 acatgtggttacattcaattacttccattttcttaaatt 101  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  41052645 acatgtggttacatttaattactttcattttcttaaatt 41052607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 43397153 - 43397111
Alignment:
Q  59 caacacatgtggttacattcaattacttccattttcttaaatt 101  Q
    ||||||||||| ||||||||||||||| | |||||||||||||    
T  43397153 caacacatgtgattacattcaattactgctattttcttaaatt 43397111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 49477757 - 49477691
Alignment:
Q  61 acacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgtc 127  Q
    ||||||||| ||||||||||  ||||||||||| | |||||||| || |||||||| || |||||||    
T  49477757 acacatgtgcttacattcaaccacttccattttatcaaattattcccgatgtctacatgtcagtgtc 49477691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 51238012 - 51238050
Alignment:
Q  66 tgtggttacattcaattacttccattttcttaaattatt 104  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  51238012 tgtgcttacattcaatcacttccattttcttaaattatt 51238050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 56008711 - 56008757
Alignment:
Q  68 tggttacattcaattacttccattttcttaaattattaccaatgtct 114  Q
    |||||||||||||||||||  ||||||||||||| |||||| |||||    
T  56008711 tggttacattcaattactttaattttcttaaattgttaccagtgtct 56008757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 27130759 - 27130811
Alignment:
Q  53 cgacaccaacacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    ||||||||| || ||||||||||||||||| | ||||||||| |||||||||||    
T  27130759 cgacaccaa-acgtgtggttacattcaattgcatccattttcataaattattac 27130811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 1678730 - 1678682
Alignment:
Q  57 accaacacatgtggttacattcaattacttccattttcttaaattatta 105  Q
    |||||||||||| |||||||| ||| |||| |||||||| |||||||||    
T  1678730 accaacacatgtagttacatttaatcactttcattttctcaaattatta 1678682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 6932694 - 6932646
Alignment:
Q  60 aacacatgtggttacattcaattacttccattttcttaaattattacca 108  Q
    ||||| ||||||||||| |||| |||||||||||| |||||| ||||||    
T  6932694 aacacttgtggttacatacaatcacttccattttcgtaaattcttacca 6932646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 31215086 - 31215042
Alignment:
Q  63 acatgtggttacattcaattacttccattttcttaaattattacc 107  Q
    ||||||||||||||||||| ||||| ||||| |||| ||||||||    
T  31215086 acatgtggttacattcaataacttctattttgttaacttattacc 31215042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 43978391 - 43978447
Alignment:
Q  49 aacacgacaccaacacatgtggttacattcaattacttccattttcttaaattatta 105  Q
    ||||| |||||||||||| | ||||||||| || |||||  ||||||||||||||||    
T  43978391 aacacaacaccaacacatatagttacattctatcacttctgttttcttaaattatta 43978447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 2468426 - 2468696
Alignment:
Q  7 agtagagacacttcagattgaaggcgaattgtgtgtccacaaaacacgacaccaacacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468426 agtagagacacttcagattgaaggcgaattgtgtgtccacaaaacacgacaccaacacatgtggttacattcaattacttccattttcttaaattattac 2468525  T
Q  107 caatgtctacgtgccagtgtcggtgctttatagaacaaaaacaacagcagcagcagcaaacaagccatgtactcatgtatttagtgtctcacattgacac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468526 caatgtctacgtgccagtgtcggtgctttatagaacaaaaacaacagcagcagcagcaaacaagccatgtactcatgtatttagtgtctcacattgacac 2468625  T
Q  207 atataacaactcacgtggttacactcaattacttccaatttcttaaatcattaccaatgtctacgtgccag 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2468626 atataacaactcacgtggttacactcaattacttccaatttcttaaatcattaccaatgtgtacgtgccag 2468696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 2468640 - 2468697
Alignment:
Q  67 gtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagt 124  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||| |||||||||||    
T  2468640 gtggttacactcaattacttccaatttcttaaatcattaccaatgtgtacgtgccagt 2468697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 2467817 - 2467867
Alignment:
Q  64 catgtggttacattcaattacttccattttcttaaattattaccaatgtct 114  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||||||||    
T  2467817 catgtggttacactcaattactttcattgtcttaaattattaccaatgtct 2467867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 2467813 - 2467867
Alignment:
Q  214 aactcacgtggttacactcaattacttccaatttcttaaatcattaccaatgtct 268  Q
    |||||| |||||||||||||||||||| || | |||||||| |||||||||||||    
T  2467813 aactcatgtggttacactcaattactttcattgtcttaaattattaccaatgtct 2467867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 16295591 - 16295529
Alignment:
Q  50 acacgacaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgt 112  Q
    |||||| |||||||||||| ||||| |||||| || || ||||||| ||||||||||||||||    
T  16295591 acacgataccaacacatgtagttacgttcaatcacctctattttctaaaattattaccaatgt 16295529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 19794940 - 19794891
Alignment:
Q  65 atgtggttacattcaattacttccattttcttaaattattaccaatgtct 114  Q
    ||||||| |||||||||| ||||||||||||||||||| || ||||||||    
T  19794940 atgtggtcacattcaattgcttccattttcttaaattactatcaatgtct 19794891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 7381305 - 7381357
Alignment:
Q  51 cacgacaccaacacatgtggttacattcaattacttccattttcttaaattat 103  Q
    ||||||||||| ||||||| |||||||| ||||| |||||||||| |||||||    
T  7381305 cacgacaccaatacatgtgattacattcgattacatccattttctcaaattat 7381357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 34443051 - 34443099
Alignment:
Q  61 acacatgtggttacattcaattacttccattttcttaaattattaccaa 109  Q
    ||||||||||||||||||||| |||| || ||||| |||||||||||||    
T  34443051 acacatgtggttacattcaatcactttcactttctcaaattattaccaa 34443099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 10338664 - 10338610
Alignment:
Q  57 accaacacatgtggttacattcaattacttccattttcttaaattattaccaatgt 112  Q
    ||||||||| ||| ||||||||||| ||||| ||||||||||||||||| ||||||    
T  10338664 accaacaca-gtgattacattcaatcacttctattttcttaaattattatcaatgt 10338610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 106
Target Start/End: Original strand, 29219675 - 29219705
Alignment:
Q  76 ttcaattacttccattttcttaaattattac 106  Q
    |||||||||||||||||||||||||||||||    
T  29219675 ttcaattacttccattttcttaaattattac 29219705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 29236008 - 29235954
Alignment:
Q  59 caacacatgtggttacattcaattacttccattttcttaaattattaccaatgtc 113  Q
    ||||||| ||||||| ||||| | ||||||||||||| |||||||||||| ||||    
T  29236008 caacacaagtggttatattcagtcacttccattttctcaaattattaccagtgtc 29235954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 1960324 - 1960385
Alignment:
Q  49 aacacgacaccaacacatgtggttacattcaattacttccattttcttaaattattaccaat 110  Q
    |||||||||||  ||||||   ||||||||||| |||| ||||||||||||||| |||||||    
T  1960324 aacacgacaccggcacatgaaattacattcaatcactttcattttcttaaattactaccaat 1960385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 2467559 - 2467611
Alignment:
Q  53 cgacaccaacacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    ||||||||| || ||||||||||||||||| | ||||||||| |||||||||||    
T  2467559 cgacaccaa-acgtgtggttacattcaattgcatccattttcataaattattac 2467611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 1960642 - 1960694
Alignment:
Q  67 gtggttacattcaattacttccattttcttaaattattaccaatgtctacgtg 119  Q
    ||||||||||||||| |||| |||| |||  ||||||||||||| ||||||||    
T  1960642 gtggttacattcaatcactttcattgtctacaattattaccaatatctacgtg 1960694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 4382901 - 4382857
Alignment:
Q  61 acacatgtggttacattcaattacttccattttcttaaattatta 105  Q
    |||||||| |||| |||||||||||| ||||||||| ||||||||    
T  4382901 acacatgtagttaaattcaattactttcattttctttaattatta 4382857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 32931490 - 32931542
Alignment:
Q  53 cgacaccaacacatgtggttacattcaattacttccattttcttaaattatta 105  Q
    ||||||| |||||||| |||| ||| ||| ||||| |||||||||||||||||    
T  32931490 cgacaccgacacatgtagttatatttaatcacttctattttcttaaattatta 32931542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 34406480 - 34406440
Alignment:
Q  63 acatgtggttacattcaattacttccattttcttaaattat 103  Q
    |||| |||||||||||||| |||| ||||||||||||||||    
T  34406480 acatatggttacattcaatcactttcattttcttaaattat 34406440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 9696099 - 9696021
Alignment:
Q  49 aacacgacaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgtc 127  Q
    |||||||||||||||| ||  |||| ||||||| |||||||||| ||||||||||||||| |||||| ||| |||||||    
T  9696099 aacacgacaccaacacgtgaagttatattcaatcacttccatttccttaaattattaccagtgtctatgtgtcagtgtc 9696021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 29651755 - 29651810
Alignment:
Q  50 acacgacaccaacacatgtggttacattcaattacttccattttcttaaattatta 105  Q
    ||||||||||||||||||| ||||| |||||| ||||| ||||||||||| |||||    
T  29651755 acacgacaccaacacatgttgttacgttcaatcacttctattttcttaaactatta 29651810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 10319306 - 10319352
Alignment:
Q  82 tacttccattttcttaaattattaccaatgtctacgtgccagtgtcg 128  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  10319306 tacttccattttcttatattattaccgatgtctacgtgacagtgtcg 10319352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 5739649 - 5739565
Alignment:
Q  55 acaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgtcggtgctttatag 139  Q
    ||||| ||||||||  ||||||||||| | ||||||||||| ||||||||| ||||| | || || ||||||||  |||||||||    
T  5739649 acaccgacacatgtacttacattcaatcatttccattttctcaaattattatcaatgccaacatgacagtgtcgcagctttatag 5739565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 14619007 - 14619059
Alignment:
Q  54 gacaccaacacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    |||||| |||| |||| || |||||||||||||||||||||| ||||||||||    
T  14619007 gacaccgacacttgtgatttcattcaattacttccattttctcaaattattac 14619059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 3943800 - 3943757
Alignment:
Q  63 acatgtggttacattcaattacttccattttcttaaattattac 106  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||    
T  3943800 acatgtggttacattcaatcacttttattttcttaaattattac 3943757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 16331033 - 16330978
Alignment:
Q  61 acacatgtggttacattcaattacttccattttcttaaattattaccaatgtctac 116  Q
    ||||||||||||||||| ||| | || ||||||||||||||||||| | |||||||    
T  16331033 acacatgtggttacatttaatcattttcattttcttaaattattactagtgtctac 16330978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 11203284 - 11203226
Alignment:
Q  70 gttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgtcg 128  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||| ||  ||||||||    
T  11203284 gttacattctattacttccattttcttaaactattaccggtgtctatgtagcagtgtcg 11203226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 29418107 - 29418165
Alignment:
Q  57 accaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtcta 115  Q
    ||||||||||||||||| ||| ||| |||||| |||||| || |||||||| |||||||    
T  29418107 accaacacatgtggttatattgaatcacttcccttttctaaatttattaccgatgtcta 29418165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 6501553 - 6501489
Alignment:
Q  54 gacaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtg 119  Q
    |||||| ||||||||||||||||| ||||| || |||| ||| |||||||||||| |||| |||||    
T  6501553 gacaccgacacatgtggttacatttaatta-tttcattctctcaaattattaccagtgtcaacgtg 6501489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 10440436 - 10440371
Alignment:
Q  50 acacgacaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtcta 115  Q
    |||||||| | |||||||| || ||||||||| ||||  ||||||||||||||||| | |||||||    
T  10440436 acacgacaacgacacatgtagtaacattcaatcacttttattttcttaaattattatcgatgtcta 10440371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 30289855 - 30289795
Alignment:
Q  68 tggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgtcg 128  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||| || ||||||||    
T  30289855 tggttacattcaattactcacattttcttaaattattaccagtgtctacatgtcagtgtcg 30289795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 5453759 - 5453704
Alignment:
Q  64 catgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtg 119  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||    
T  5453759 catgtggttatattcaatcacttccattttcttaaattactaccagtgtctacgtg 5453704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 31095196 - 31095148
Alignment:
Q  60 aacacatgtggttacattcaattacttccattttcttaaattattacca 108  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||||    
T  31095196 aacacatgtagttatattcaattacttccattttctcaaattattacca 31095148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 22556296 - 22556234
Alignment:
Q  56 caccaacacatgtggtt-acattcaattacttccattttcttaaattattaccaatgtctacg 117  Q
    |||||||| |||||||| ||||||||| ||||| |||||||||||||||||||  ||||||||    
T  22556296 caccaacatatgtggtttacattcaatcacttctattttcttaaattattacctgtgtctacg 22556234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 35198227 - 35198287
Alignment:
Q  49 aacacgacaccaacacatgtggttacattcaattacttccattttcttaaattattaccaat 110  Q
    |||||||||||  |||||||| ||||||||||||| || |||||||||||||||| ||||||    
T  35198227 aacacgacaccgtcacatgtgattacattcaattaatt-cattttcttaaattatgaccaat 35198287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 8518096 - 8518044
Alignment:
Q  49 aacacgacaccaacacatgtggttacattcaattacttccattttcttaaatt 101  Q
    ||||||||||| |||||| | |||||||||||||||||| ||||||| |||||    
T  8518096 aacacgacaccgacacatttagttacattcaattacttctattttctcaaatt 8518044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 39459841 - 39459778
Alignment:
Q  55 acaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtg 119  Q
    ||||| |||| |||| ||||||||||||| ||| |||| |||||||||||||||||||| |||||    
T  39459841 acaccgacacgtgtgattacattcaattaattc-atttccttaaattattaccaatgtcgacgtg 39459778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 15804120 - 15804159
Alignment:
Q  71 ttacattcaattacttccattttcttaaattattaccaat 110  Q
    ||||||||||| ||||||||||||| ||||||||||||||    
T  15804120 ttacattcaatcacttccattttctcaaattattaccaat 15804159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 32915855 - 32915905
Alignment:
Q  64 catgtggttacattcaattacttccattttcttaaattattaccaatgtct 114  Q
    |||||||||||||||||| ||||||||||| | |||| |||||| ||||||    
T  32915855 catgtggttacattcaatcacttccattttttcaaatcattaccgatgtct 32915905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 39941341 - 39941300
Alignment:
Q  61 acacatgtggttacattcaattacttccattttcttaaatta 102  Q
    |||||||||||||||||||||  ||| |||||||||||||||    
T  39941341 acacatgtggttacattcaatcgcttacattttcttaaatta 39941300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 3103530 - 3103607
Alignment:
Q  61 acacatgtggttacattcaatta-cttccattttcttaaattattaccaatgtctacgtgccagtgtcggtgctttatag 139  Q
    ||||||| ||||||||||||||| |||  ||||||| |||||||||| |||||| ||||| ||||||  |||||| ||||    
T  3103530 acacatgcggttacattcaattatctt--attttctcaaattattactaatgtccacgtgtcagtgtttgtgcttcatag 3103607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 17386533 - 17386489
Alignment:
Q  57 accaacacatgtggttacattcaattacttccattttcttaaatt 101  Q
    |||||||||||| |||||||||||| | |||||||||| ||||||    
T  17386533 accaacacatgtagttacattcaatcatttccattttcataaatt 17386489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 22877144 - 22877112
Alignment:
Q  61 acacatgtggttacattcaattacttccatttt 93  Q
    |||||||||||||||||||||||||| ||||||    
T  22877144 acacatgtggttacattcaattactttcatttt 22877112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 398700 - 398645
Alignment:
Q  50 acacgacaccaacacatgtggttacattcaattacttccattttcttaaattatta 105  Q
    |||| ||||||| ||| ||||||||||||||||||||| |||||||||||||||||    
T  398700 acacaacaccaatacacgtggttacattcaattacttcaattttcttaaattatta 398645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 26643275 - 26643351
Alignment:
Q  50 acacgacaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgtc 127  Q
    ||||| |||||| | ||||||||||||||||||| ||| |||||||||||||||||||| | || ||||| |||||||    
T  26643275 acacggcaccaataaatgtggttacattcaatta-ttctattttcttaaattattaccagtatcgacgtgtcagtgtc 26643351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 42065121 - 42065181
Alignment:
Q  59 caacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtg 119  Q
    ||||||| ||||||||||||||| ||||| |||||||||| |||||||  |||||||||||    
T  42065121 caacacacgtggttacattcaatcacttctattttcttaatttattactcatgtctacgtg 42065181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 18871430 - 18871363
Alignment:
Q  50 acacgacaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgt 118  Q
    |||| |||| ||||||||||  |||||| ||| ||||| |||||||||||||||||| |||||||||||    
T  18871430 acacaacactaacacatgtgactacatt-aatcacttctattttcttaaattattacaaatgtctacgt 18871363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 28286942 - 28286906
Alignment:
Q  70 gttacattcaattacttccattttcttaaattattac 106  Q
    ||||||||||||||||| |||||||||||||||||||    
T  28286942 gttacattcaattactttcattttcttaaattattac 28286906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 28987969 - 28988005
Alignment:
Q  66 tgtggttacattcaattacttccattttcttaaatta 102  Q
    |||||||||||||||||||||||||||||| ||||||    
T  28987969 tgtggttacattcaattacttccattttctaaaatta 28988005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 53791953 - 53792003
Alignment:
Q  54 gacaccaacacatgtggttacattcaattacttccattttcttaaattatta 105  Q
    |||||| ||||||||||||||||||||||| |||| |||||| |||||||||    
T  53791953 gacaccgacacatgtggttacattcaatta-ttcctttttctcaaattatta 53792003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 43033119 - 43033169
Alignment:
Q  68 tggttacattcaattacttccattttcttaaattattaccaatgtctacgt 118  Q
    ||||||||||||||||||| ||||||| |||||||||  || |||||||||    
T  43033119 tggttacattcaattacttacattttcctaaattattttcagtgtctacgt 43033169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 49636823 - 49636880
Alignment:
Q  50 acacgacaccaacacatgtggttacattcaattacttccattttcttaaattattacca 108  Q
    ||||||||||| | |||||| ||||||||||||| || |||||||| ||||||||||||    
T  49636823 acacgacaccagcgcatgtgattacattcaattaatt-cattttctcaaattattacca 49636880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 14032977 - 14032904
Alignment:
Q  55 acaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgtcg 128  Q
    ||||||||| |||| |||| | | ||| ||||| |||||||||||||||||||  ||||||| || ||||||||    
T  14032977 acaccaacatatgttgttatacttaatcacttctattttcttaaattattacctttgtctacatgtcagtgtcg 14032904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 36895420 - 36895368
Alignment:
Q  54 gacaccaacacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    |||||||||||||||| ||||||||||| ||||  ||||| | ||||||||||    
T  36895420 gacaccaacacatgtgattacattcaatcacttatattttatcaaattattac 36895368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 42974865 - 42974825
Alignment:
Q  61 acacatgtggttacattcaattacttccattttcttaaatt 101  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  42974865 acacatgtagtaacattcaattacttctattttcttaaatt 42974825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 29587728 - 29587668
Alignment:
Q  65 atgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtg 125  Q
    ||||||||||||| ||| |||||||||||||||||||||||||  ||| |||||| |||||    
T  29587728 atgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagtg 29587668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 34806219 - 34806153
Alignment:
Q  60 aacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgt 126  Q
    |||| |||| ||||||||||| || ||||||||||||||||||||| |  |||||||||| ||||||    
T  34806219 aacatatgtagttacattcaagtaattccattttcttaaattattatcggtgtctacgtgtcagtgt 34806153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 38685306 - 38685340
Alignment:
Q  61 acacatgtggttacattcaattacttccattttct 95  Q
    |||||||||||||||||||||||||||||||||||    
T  38685306 acacatgtggttacattcaattacttccattttct 38685340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 10948770 - 10948822
Alignment:
Q  60 aacacatgtggttacattcaattacttccattttcttaaattattaccaatgt 112  Q
    |||||||||||||| ||||||||||||||||||| | |||||| || ||||||    
T  10948770 aacacatgtggttatattcaattacttccattttttcaaattactatcaatgt 10948822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 13398399 - 13398347
Alignment:
Q  59 caacacatgtggttacattcaattacttccattttcttaaattattaccaatg 111  Q
    |||||||| ||| |||||| ||| ||||| |||||||||||||||||||||||    
T  13398399 caacacatatggctacatttaatcacttctattttcttaaattattaccaatg 13398347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 39828522 - 39828473
Alignment:
Q  56 caccaacacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    |||||||||||||||||||||||||||| || ||| |||| ||||||||||    
T  39828522 caccaacacatgtggttacattcaatta-tttcatattctcaaattattac 39828473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 18542218 - 18542263
Alignment:
Q  61 acacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    ||||||||| ||||||||||||||||  ||||||| ||||||||||    
T  18542218 acacatgtgattacattcaattacttgtattttctcaaattattac 18542263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 27249622 - 27249570
Alignment:
Q  53 cgacaccaacacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    ||||||||||||||||| | ||||| ||| |||||||||||| |||||||||||    
T  27249622 cgacaccaacacatgtgct-acatttaatcacttccattttcataaattattac 27249570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 28322303 - 28322251
Alignment:
Q  50 acacgacaccaacacatgtggttacattcaattacttccattttcttaaattat 103  Q
    |||| ||||||||||||||| ||||||||||||| || |||||||| |||||||    
T  28322303 acactacaccaacacatgtgattacattcaattaatt-cattttctcaaattat 28322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 28735830 - 28735886
Alignment:
Q  71 ttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgtcg 128  Q
    ||||||||||| ||||| ||||||||||||||||| || |||||| ||| ||||||||    
T  28735830 ttacattcaatcacttctattttcttaaattatta-cagtgtctatgtgtcagtgtcg 28735886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 40205593 - 40205641
Alignment:
Q  54 gacaccaacacatgtggttacattcaattacttccattttcttaaattatta 105  Q
    |||||||||||||||   ||||||||||||||| ||||||||||| ||||||    
T  40205593 gacaccaacacatgt---tacattcaattacttacattttcttaatttatta 40205641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 12976657 - 12976705
Alignment:
Q  58 ccaacacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    |||||||||||| ||||||||| | ||||  ||||||||||||||||||    
T  12976657 ccaacacatgtgattacattcattgacttttattttcttaaattattac 12976705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 14314900 - 14314952
Alignment:
Q  50 acacgacaccaacacatgtggttacattcaattacttccattttcttaaatta 102  Q
    |||| |||| |||||||||| ||||| || || ||||||||||||||||||||    
T  14314900 acacaacactaacacatgtgcttacactcgataacttccattttcttaaatta 14314952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 3724113 - 3724043
Alignment:
Q  55 acaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgt 126  Q
    |||||||||| ||| ||||||||||||||||| || |||||||| ||||||||| ||||| |||| ||||||    
T  3724113 acaccaacacgtgtagttacattcaattactttca-tttcttaatttattaccattgtctgcgtgtcagtgt 3724043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 438688 - 438730
Alignment:
Q  63 acatgtggttacattcaattacttccattttcttaaattatta 105  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  438688 acatgtggttacatttaattacttcaattttcttaaattatta 438730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 25280454 - 25280404
Alignment:
Q  50 acacgacaccaacacatgtggttacattcaattacttccattttcttaaat 100  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||| ||||    
T  25280454 acacgacacaaacacatgtgattatattcaattacttccattttctcaaat 25280404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 953739 - 953681
Alignment:
Q  70 gttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgtcg 128  Q
    ||||||||||||| || ||||||||| |||| |||| ||||||| ||||| ||||||||    
T  953739 gttacattcaatttctcccattttctcaaatcattatcaatgtcgacgtgtcagtgtcg 953681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 2811306 - 2811268
Alignment:
Q  68 tggttacattcaattacttccattttcttaaattattac 106  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  2811306 tggttacattcaattacttttattttcttaaattattac 2811268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 34395075 - 34395025
Alignment:
Q  52 acgacaccaacacatgtggttacattcaattacttccattttcttaaatta 102  Q
    |||||||| |||| |||||||| ||||||| ||||| ||||||||||||||    
T  34395075 acgacaccgacacgtgtggttagattcaatcacttctattttcttaaatta 34395025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 1741137 - 1741085
Alignment:
Q  53 cgacaccaacacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    ||||||||| ||||||| | ||||||||| |||||||||||| |||||||||||    
T  1741137 cgacaccaatacatgtgct-acattcaatcacttccattttcataaattattac 1741085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 10893870 - 10893917
Alignment:
Q  54 gacaccaacacatgtggttacattcaattacttccattttcttaaatta 102  Q
    |||||||||||||||| ||||||||||||| |  |||||||||||||||    
T  10893870 gacaccaacacatgtgattacattcaatta-tgtcattttcttaaatta 10893917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 39625711 - 39625667
Alignment:
Q  54 gacaccaacacatgtggttacattcaattacttccattttcttaa 98  Q
    |||||||| |||||| ||| |||||||||||||| ||||||||||    
T  39625711 gacaccaagacatgtcgttgcattcaattacttcaattttcttaa 39625667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 16567346 - 16567303
Alignment:
Q  61 acacatgtggttacattcaattacttccattttcttaaattatt 104  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  16567346 acacatgtggttacattcaatcatttccattttcttaaattatt 16567303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 26462653 - 26462710
Alignment:
Q  61 acacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtg 119  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||||| || |||| |||||    
T  26462653 acacatgtgattacattcaattatttc-attttcttaaattattatcagtgtcgacgtg 26462710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 46632009 - 46632067
Alignment:
Q  50 acacgacaccaacacatgtggttacattcaattacttccattttcttaaattattacca 108  Q
    ||||||||||||||| |||| |||||| || | ||||| ||| ||||||||||||||||    
T  46632009 acacgacaccaacacttgtgattacatacactcacttctattatcttaaattattacca 46632067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 2445459 - 2445500
Alignment:
Q  65 atgtggttacattcaattacttccattttcttaaattattac 106  Q
    ||||| ||||||||||| |||||||||||||||||| |||||    
T  2445459 atgtgattacattcaatcacttccattttcttaaatgattac 2445500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 303733 - 303693
Alignment:
Q  61 acacatgtggttacattcaattacttccattttcttaaatt 101  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  303733 acacttgtggttacattcaattactttcattttctcaaatt 303693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 10042342 - 10042298
Alignment:
Q  62 cacatgtggttacattcaattacttccattttcttaaattattac 106  Q
    |||||||||||||||||||| ||||| ||||||  ||||||||||    
T  10042342 cacatgtggttacattcaatcacttctattttcacaaattattac 10042298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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