View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309-Insertion-4 (Length: 500)
Name: NF1309-Insertion-4
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 3761023 - 3760685
Alignment:
| Q |
7 |
aaccagcacccttcaaagaacaaaactctcatacgagcttcccaatttgctatgccattcaaaattatcgtaatagaatccactaagaattgggtccggt |
106 |
Q |
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| T |
3761023 |
aaccagcacccttcaaagtacaaaactctcatacgagcttcccaatttgctttgcctttcaaaattatcgtaatagaatccactaagaattgggtccggt |
3760924 |
T |
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| Q |
107 |
ctaggtcaagaacaagtggtag--cacaatctgcaagttaatggggatatgtaaatttcaaaataggaacaagaatttagaatgnnnnnnnntaaagaaa |
204 |
Q |
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| T |
3760923 |
ctaggtcaagaacaagtggtagcacacaatctgcaagttaatggggatatgtaaatttcaaaataggaacaagaatttagaatgaaaaaaaataaagaaa |
3760824 |
T |
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| Q |
205 |
gagataaagcaaaagctttagtcttggatcactttctctattctcattttcccatggatgaagatctgcctttgcctttaccatcagcatcaaacccttc |
304 |
Q |
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| T |
3760823 |
gagataaagcaaaagctttagtcttggatcactttctctattctcattttcccatggatgaagatctgcctttgcctttaccatcagcatcaaacccttc |
3760724 |
T |
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| Q |
305 |
tcactcagtttgcttgtga-ttgccatctcgaatctctc |
342 |
Q |
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| T |
3760723 |
tcactcagtttgcttgtgatttgccatctcgaatctctc |
3760685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 374 - 500
Target Start/End: Complemental strand, 3760653 - 3760527
Alignment:
| Q |
374 |
caaacctattcttgtcagtaagtttccattggaatgctttatcatgatcgagaaaattaacgtatcccaacaacactttcttttgatcataacaatcaaa |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3760653 |
caaacctattcttgtcagtaagtttccattggaatgctttatcatgatcgagaaaattaacgtatcccaacaacactttcttttgatcataacaatcaaa |
3760554 |
T |
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| Q |
474 |
gtaccccatttactcttctttctatca |
500 |
Q |
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| T |
3760553 |
gtaccccatttactcttctttctatca |
3760527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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