View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309-Insertion-6 (Length: 576)
Name: NF1309-Insertion-6
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309-Insertion-6 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 281 - 576
Target Start/End: Complemental strand, 33117081 - 33116786
Alignment:
| Q |
281 |
aacaagtgtcatcatgtttgttggtgctcaaggtttgttactcttacttactgttaattatattcattatgtttatgtttttgaatttaatttctatatg |
380 |
Q |
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| T |
33117081 |
aacaagtgccatcatgtttgttggtgctcaaggtttgttactcttacttactgttaattatattcattatgtttatgtttttgaatttaatttctatatg |
33116982 |
T |
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| Q |
381 |
taatgttaaattcaggttgtggaaaaacaacaacgtgtgcacaatttgcaaatcattatcagaagaaaggattaaagacaggtttagtgtgtacatatac |
480 |
Q |
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| T |
33116981 |
taatgttaaattcaggttgtggaaaaacaacaacgtgtgcacaatttgcaaatcattatcagaagaaaggattaaagacaggtttagtgtgtacagatac |
33116882 |
T |
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| Q |
481 |
acttagaaatggtgcatttgatcaattcaagcagatttatgctgaaactaacatcccttgttatggaaggtacatacatgtctgtatttcttgtga |
576 |
Q |
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| T |
33116881 |
acttagaaatggtgcatttgatcaattgaagcagatttatgctgaaactaacatcccttgttatggaaggtacatacatgtttgtatttcttgtga |
33116786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 33117284 - 33117075
Alignment:
| Q |
8 |
gattttacgtggtttcgacaagatgagcaatgaaactgtgattgacaaagaaatccgcaagcgctgcgtcaatgagattactcgagctttcattcaatcc |
107 |
Q |
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| T |
33117284 |
gattttacgtggtttcgacaagatgagcaatgaaactgtgattgacaaagaaatccgcaagcgctgcgtcaatgagattactcgagctttcattcaatcc |
33117185 |
T |
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| Q |
108 |
attattgaacccaaactcatccgagacatgcatgccaaaatcaagaacattatctacaaccatcttaatcttgatgatttcgacgcagctcgtaagatga |
207 |
Q |
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| T |
33117184 |
attattgaacccaaactcatccgagacatgcatgccaaaatcaagaacattatttacaaccatcttaatcttgatgatttcgacgcagctcgtaagatga |
33117085 |
T |
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| Q |
208 |
tccaataagt |
217 |
Q |
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| T |
33117084 |
tccaacaagt |
33117075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 383 - 574
Target Start/End: Complemental strand, 33168757 - 33168569
Alignment:
| Q |
383 |
atgttaaattcaggttgtggaaaaacaacaacgtgtgcacaatttgcaaatcattatcagaagaaaggattaaagacaggtttagtgtgtacatatacac |
482 |
Q |
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| T |
33168757 |
atgttaaatccaggttgtggaaaaacaaca---tgtacacaatatgccaattattatcagaaaaaaggattaaaggaaggagtagtttgtgcagatacat |
33168661 |
T |
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| Q |
483 |
ttagaaatggtgcatttgatcaattcaagcagatttatgctgaaactaacatcccttgttatggaaggtacatacatgtctgtatttcttgt |
574 |
Q |
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| T |
33168660 |
ttagagatggtgcatttgatcaattgaagcaaaattcaaccaaaactaacatcccttttaatggaaggtacatacatgtttgtatttgttgt |
33168569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 33168952 - 33168831
Alignment:
| Q |
128 |
ccgagacatgcatgccaaaatcaagaacattatctacaaccatcttaatcttgatgatttcgacgcagctcgtaagatgatccaataagttgtgtttgac |
227 |
Q |
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| T |
33168952 |
ccgagacatccgtgccaaaatcaagaacattctctacaatcatcttgatcttcatgatctcgccaccgctcataagatgatccaacaaattgtgtttggt |
33168853 |
T |
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| Q |
228 |
ggactctgcaaattgttggatc |
249 |
Q |
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| T |
33168852 |
ggagtctgcaaaatgttggatc |
33168831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 360 - 513
Target Start/End: Complemental strand, 33159443 - 33159293
Alignment:
| Q |
360 |
tttgaatttaatttctatatgtaatgttaaattcaggttgtggaaaaacaacaacgtgtgcacaatttgcaaatcattatcagaagaaaggattaaagac |
459 |
Q |
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| T |
33159443 |
tttgaatttaattatcatatgttatgctaaatctaggttgtggaaaaacaaca---tgtacacaatatggcaattattatcagaaaaaaggattaaaggc |
33159347 |
T |
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| Q |
460 |
aggtttagtgtgtacatatacacttagaaatggtgcatttgatcaattcaagca |
513 |
Q |
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| T |
33159346 |
aggagtagtttgtgcagatgcatttagagatggtgcatttgatcaattgaagca |
33159293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 389 - 552
Target Start/End: Original strand, 44823920 - 44824083
Alignment:
| Q |
389 |
aattcaggttgtggaaaaacaacaacgtgtgcacaatttgcaaatcattatcagaagaaaggattaaagacaggtttagtgtgtacatatacacttagaa |
488 |
Q |
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| T |
44823920 |
aattcaggttctggaaaaactacaacatgtacaaaatatgcgcattgttatcagaagaaaggatggaagccagctttagtgtgtgcagatacatttagag |
44824019 |
T |
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| Q |
489 |
atggtgcatttgatcaattcaagcagatttatgctgaaactaacatcccttgttatggaaggta |
552 |
Q |
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| T |
44824020 |
ctggtgcatttgatcaattgaagcaaaatgctactaaagctaagatccctttttatggaaggta |
44824083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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