View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309-Insertion-7 (Length: 994)
Name: NF1309-Insertion-7
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 10 - 532
Target Start/End: Complemental strand, 49277823 - 49277301
Alignment:
| Q |
10 |
tccaactctcactgatctcaccgttgagattccaatattgggtagtccttgcagtgagagaaaagtgtggaagatttcaaaagagggaactagagctagg |
109 |
Q |
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| T |
49277823 |
tccaactctcactgatctcaccgttgagattccaatattgggtagtccttgcagtgagagaaaagtgtggaagatttcaaaagagggaactagagctagg |
49277724 |
T |
|
| Q |
110 |
ttttggtttgtgagcaccggtggttttcctgggaacctttttagccagttcaagattgagaggcttgagggagaacatgcttatgagatttatagctttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49277723 |
ttttggtttgtgagcaccggtggttttcctgggaacctttttagccagtttaagattgagaggcttgagggagaacatgcttatgagatttatagctttc |
49277624 |
T |
|
| Q |
210 |
tgtactgtccttctgttcctggtactctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctcttggtgctggtattgaaga |
309 |
Q |
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| T |
49277623 |
tgtactgtccttctgttcctggtactctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctcttggtgctggtattgaaga |
49277524 |
T |
|
| Q |
310 |
accttattatgttagatttcagaaggcttccacttttactcagaacaagaatcaagatttcagcggtgtctagtttgacacattgtatttgtggttagag |
409 |
Q |
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| T |
49277523 |
accttattatgttagatttcagaaggcttccacttttactcagaacaagaatcaagatttcagcggtgtctagtttggcacattgtatttgtggttagag |
49277424 |
T |
|
| Q |
410 |
agtacttgttatgttttaagatttgccaccctttcttgtcataagtgaaatgaaattcaacctttatgtctactatctgtctcaaatttatctgtgttct |
509 |
Q |
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| T |
49277423 |
agtacttgttatgttttaagatttgccaccctttcttgtcataagtgaaatgaaattcaacctttatgtctaatatctgtctcaaatttatctgtgttct |
49277324 |
T |
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| Q |
510 |
annnnnnncctacacttttatta |
532 |
Q |
| |
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| ||||||||||||||| |
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| T |
49277323 |
atttttttcctacacttttatta |
49277301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 536 - 990
Target Start/End: Complemental strand, 49277263 - 49276805
Alignment:
| Q |
536 |
tgaaaagtttattctttttcgcacacaattcccagcaaacaatgaatagtgttatttgttttaggtcttttgccacaggtatacatgtcatattgttgag |
635 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49277263 |
tgaaaaatttattctttttcgcacacaattcccagcaaacaatgaatagtgttatttgttttaggtcttttgccacaggtatacatgtcatattgttgaa |
49277164 |
T |
|
| Q |
636 |
ttagtttttaattttctagttaaaatcaatccatttttaccctttcaannnnnnngcactaaaaaatatagacgaatatgggttagtcaaatatttttac |
735 |
Q |
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| T |
49277163 |
ttagtttttaattttctagttaaaatcaatccatttttaccctttcaatttttttgcactaaaaaatatagacgaacatgggttagtcgaatatttttac |
49277064 |
T |
|
| Q |
736 |
cgaggcctaagaagatcgcgaagatatcaaactcagtcaaaatttagaggaagcagacaatttaacaatttactcctcacactccatatttataatgtat |
835 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49277063 |
cgaggcctaagaagattgtgaagatatcaaactcagtcaaaatttagaggaagcagacaatttaacaatttacccctcacactccatatttataatgtat |
49276964 |
T |
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| Q |
836 |
taatcgaagaaagtgatatcatcgcaagtgcatgattttatcgtcgtgataaaatatcgattccacatatgggattgt-aacctc-agttannnnnnnct |
933 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
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| T |
49276963 |
taatcgaagaaagtgatatcatcgcaagtgcatgattttatcgtcgtgataaaatatcgattccacatatgggattgtgaacctcaagttatttttttct |
49276864 |
T |
|
| Q |
934 |
ca-caagaatgc-aaagaaaagagaaaatggttatttccattttctacggtactactct |
990 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276863 |
caccaagaatgcaaaagaaaagagaaaatggttatttccattttctacggtactactct |
49276805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 49271900 - 49271538
Alignment:
| Q |
10 |
tccaactctcactgatctcaccgttgagattccaatattgggtagtccttgcagtgagagaaaagtgtggaagatttcaaaagagggaactagagctagg |
109 |
Q |
| |
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||||||||||||||| |||||| |||||||||| || ||||||||||||||| ||| ||||||||||| | ||| ||| | || || | | |
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| T |
49271900 |
tccaactctcactgacctcaccattgagattcctattctgggtagtccttgcaatgaaccaaaagtgtggaggcttttaaaggttgggtctgg------g |
49271807 |
T |
|
| Q |
110 |
ttttggtttgtgagcaccggtggttttcctgggaacctttttagccagttcaagattgagaggcttgagggagaacatgcttatgagatttatagctttc |
209 |
Q |
| |
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||||||||||||||||| |||||| ||||| | ||| ||||| ||||||||||||||||||||| || ||||||||||||||||| ||||||||| |
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| T |
49271806 |
ttttggtttgtgagcactggtggtgcagctggggatcttgttagcaagttcaagattgagaggcttgcaggtgaacatgcttatgagatatatagcttta |
49271707 |
T |
|
| Q |
210 |
tgtactgtccttctgttcctggtactctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctcttggtgctggtattgaaga |
309 |
Q |
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|| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
49271706 |
agttctgtccctctgttcctggtgttctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctgttggtgatggtattgaaga |
49271607 |
T |
|
| Q |
310 |
accttattatgttagatttcagaaggcttccacttttactcagaacaagaatcaagatttcagcggtgt |
378 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||| ||| ||||||||||| ||| |||| |
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| T |
49271606 |
accttactatgttagatttcagaaggcttccacttttgctcagagcaataatcaagatttgagcagtgt |
49271538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 49269254 - 49269115
Alignment:
| Q |
214 |
ctgtccttctgttcctggtactctttgtgctcctgttggaacttttgtagatactgatggaactaaagttatggctcttggtgctggtattga---agaa |
310 |
Q |
| |
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||||||||||||||||||| || | |||||||||||| ||||||| |||||| ||||||||||||||||||||| |||||| ||||| ||| ||| |
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| T |
49269254 |
ctgtccttctgttcctggtgctttatgtgctcctgttcgaactttcacagataccgatggaactaaagttatggctgttggtgatggtaatgatcttgaa |
49269155 |
T |
|
| Q |
311 |
ccttattatgttagatttcagaaggcttccacttttactc |
350 |
Q |
| |
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|||||||||||||| ||||||| || |||||||||||||| |
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| T |
49269154 |
ccttattatgttaggtttcagagggtttccacttttactc |
49269115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 849 - 902
Target Start/End: Complemental strand, 44216385 - 44216332
Alignment:
| Q |
849 |
tgatatcatcgcaagtgcatgattttatcgtcgtgataaaatatcgattccaca |
902 |
Q |
| |
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||||||||||||||||||| |||||||| |||| |||||||||| ||| |||| |
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| T |
44216385 |
tgatatcatcgcaagtgcacaattttatcatcgtaataaaatatcaattacaca |
44216332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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