View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1309-Insertion-8 (Length: 801)
Name: NF1309-Insertion-8
Description: NF1309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1309-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 6 - 801
Target Start/End: Complemental strand, 40833685 - 40832894
Alignment:
| Q |
6 |
caattgtctcctttctgcttggtgagctagcttttgcttaaactgtctttttactttatgtccacttccccgtaagtcttgtgtcaagtcacgtgacttg |
105 |
Q |
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| T |
40833685 |
caattgtctcctttctgcttggtgagctagcttttgcttaaactgtctttttactttatgtccacttcaccctaagtcttgtgtcaagtcacgtgacttg |
40833586 |
T |
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| Q |
106 |
cttccttccaattttgtatggtaaattgttgctatttggtccaactgtctctctttttgcttccaccatgctgtaattaatttccctttttatacattaa |
205 |
Q |
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| T |
40833585 |
cttccttccaattttgt------------tgctatttggtccaactgtctctctttttgcttccaccatgctgtaattaatttccctttttatacattaa |
40833498 |
T |
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| Q |
206 |
ttgtgaaaagttttcttatatgcatagcatcttttatggttaaaccttagaggcatgcaatgtagtgaatttaggttggatctggaagtgtatgtcacat |
305 |
Q |
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| T |
40833497 |
ttgtgaaaagttttcttacatgcatagcatcttttatggttaaaccttagaggcatgcaatgtagtgaatttaggttggatctggaagtgtatgtcacat |
40833398 |
T |
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| Q |
306 |
ttagagcatgatgactttatgaacatgattgtctttaataggaacaaaactatgggatcataatgataaaaatcaaatagcaattgaatttttgctttca |
405 |
Q |
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| T |
40833397 |
ttagagcatgatgactttatgaacatgattgtctttaataggaacaaaactatgggatcataatgataaaaatcaaatagcaattgaatttttgctttca |
40833298 |
T |
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| Q |
406 |
attggtaaatctt--cagagtaatttatatcctaaaccttacttggtannnnnnnnnngcttttaattagtgtattccgttttaaaaggaatattttgga |
503 |
Q |
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| T |
40833297 |
attggtaaatcttcacagagcaatttatatcctaaaccttacttggta--ttttttttgcttttaattagtgtattccattttaaaaggaatatttcgga |
40833200 |
T |
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| Q |
504 |
agatttccttcactagtcgaagaagag--gcgtgtgtctgtacgcgtgcgcatgta--nnnnnnngagtagcttctgatttccaacatctacaggtacgg |
599 |
Q |
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| T |
40833199 |
aggtttccttcactagtcgaagaagaggtgtgtgtgtgtgtacgcgtgcgcatgtattttttttttagtagcttctgatttccaacatctacaggtacgg |
40833100 |
T |
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| Q |
600 |
tctgccttttgtgtctcccaacaacataccggtaacaacagtaaatggcaccggagcagggattgaaatcatatatgttctgatattcatcatatttgca |
699 |
Q |
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| T |
40833099 |
tctgccttttgtgtctcccaacaacataccggtaacaacagtaaatggcaccggagcagggattgaaatcatatatgttttgatattcatcatatttgca |
40833000 |
T |
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| Q |
700 |
cctaagaagg-aaaaatc-aaatctttgccctattcaccttggtactgtctgtgttctctgctgttg-ttttgtct-cctctttgccttccatggcaatc |
795 |
Q |
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| T |
40832999 |
cctaagaaggaaaaaatcaaaatctttgccctattcaccttggtactgtctgtgttctctgctgttgtttttgtctccctctttgccttccatggcaatc |
40832900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 710
Target Start/End: Original strand, 10054860 - 10054963
Alignment:
| Q |
607 |
tttgtgtctcccaacaacataccggtaacaacagtaaatggcaccggagcagggattgaaatcatatatgttctgatattcatcatatttgcacctaaga |
706 |
Q |
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| T |
10054860 |
tttgtgtcaccagacaacatacttgtaacaatcataaatggaacaggagcagttattgaaatcatatatgttttcattttcatagtgtttgcacctaaga |
10054959 |
T |
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| Q |
707 |
agga |
710 |
Q |
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| T |
10054960 |
agga |
10054963 |
T |
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