View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_high_1 (Length: 817)
Name: NF13090_high_1
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 703; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 1 - 803
Target Start/End: Complemental strand, 25866852 - 25866050
Alignment:
| Q |
1 |
tctcatttgatactcccctaaccaccaaactttactcacctttctgtgtgagaagtctcattccatcggagaggagattctcctgtctgtttgtaaagat |
100 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25866852 |
tctcatttgatactcccccaacaaccaaactttactcacctttctgtgtgagaagtctcattccatcggagaggagattctcctgtctgtttgtaaagat |
25866753 |
T |
|
| Q |
101 |
ggattgcttgaaaattaatccattttggatgtatcttatatgttaaatttgtcactgttaaacaaacttgtcaatatctggtcctttttggctgtcacca |
200 |
Q |
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| T |
25866752 |
ggattgcttgaaatttaatccattttggatgtatcttacatgttaaatttgtcactgttaaacaaacttgtcaatatctggtcctttttggctgtcacca |
25866653 |
T |
|
| Q |
201 |
tttaatgtagtttttggtgtattcatgaacattattattattttaagaaaatcttgacattacatgcatggaataatgtgttaccaatctggttagcaat |
300 |
Q |
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| T |
25866652 |
tttaatgtagtttttggtgtattcatgaacattattattattttaagaaaatcttgacattacatgcatgaaataatgtgttacgaatctggttagcaat |
25866553 |
T |
|
| Q |
301 |
gcaacttaatcatggaccaaacatgttcagtttnnnnnnnnaacaggtttttgttgacagaacagaatttatatactataattgaacattatgtctttcc |
400 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25866552 |
gcaactcaatcatggaccaaacatgttcagttt-cccccccaacaggtttttgttgacagaacagaatttatatactataattgaacattatgtctttcc |
25866454 |
T |
|
| Q |
401 |
ttttctagtatatttttgtctgatttttatttctccaaatttatgtcattataatttataatatagagaatcttcatttcaaatgaaccctaacaacaca |
500 |
Q |
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| T |
25866453 |
ttttctagtatatttttgtctgatttttatttctccaaatttatgtcattataatttataatatagagaatcttcatttcacatgaaccctaacaacaca |
25866354 |
T |
|
| Q |
501 |
ttaacagttagta-tttctcacatataatcagtactttagaaatcgacagttttataaaacgaaggttctgttattatactattttcatctaggtttaat |
599 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25866353 |
ttaacagttagtagtttctcacatataatcagtactttggaaatcgacagttttataaaacgaaggttctgttattatactattttcatctaggtttaat |
25866254 |
T |
|
| Q |
600 |
caatctgttggtccctgtactatttaggaatttttaaataggtcgctaaactnnnnnnnngtgtgcaatcagatcacctagttatgttacatatcagcct |
699 |
Q |
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| T |
25866253 |
caatctgttggtccctgtactatttaggaatttttaaataggtcgctaaactaaaaaaaagtgtgcaatcagatcacctagttatgttacatatcagcct |
25866154 |
T |
|
| Q |
700 |
aaagcggtattgcatcgctatctctctcggactgctttttccttcttggtgcatatttctgagcactatataggaacatttttctttcattaattttctt |
799 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25866153 |
aaagcggtattgcatcgctatctctctcggactgctttttccttcttggtgcatatttctgagcactacataggaacatttttctttcattaattttctt |
25866054 |
T |
|
| Q |
800 |
cgat |
803 |
Q |
| |
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|||| |
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| T |
25866053 |
cgat |
25866050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 28 - 236
Target Start/End: Complemental strand, 25868812 - 25868608
Alignment:
| Q |
28 |
aactttactcacctttctgtgtgagaagtctcattccatcggagaggagattctcctgtctgtttgtaaagatggattgcttgaaaattaatccattttg |
127 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | |||| || ||||||||| |||||| |
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| T |
25868812 |
aactttactcacctttctttgtgagaagtctcattccatcagagaggagattctcctgt----ttgtaaacacagatttctgaaaaattaatgaattttg |
25868717 |
T |
|
| Q |
128 |
gatgtatcttatatgttaaatttgtcactgttaaacaaacttgtcaatatctggtcctttttggctgtcaccatttaatgtagtttttggtgtattcatg |
227 |
Q |
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| T |
25868716 |
gatgtatcttctatgttaattttgtcaccattaaacaaacttgtcaatatctggtctcttttggttgtcagcatttaatgtagtttttggtgtattcatg |
25868617 |
T |
|
| Q |
228 |
aacattatt |
236 |
Q |
| |
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|||||||| |
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| T |
25868616 |
gacattatt |
25868608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 691 - 770
Target Start/End: Complemental strand, 25868277 - 25868199
Alignment:
| Q |
691 |
tatcagcctaaagcggtattgcatcgctatctctctcggactgctttttccttcttggtgcatatttctgagcactatat |
770 |
Q |
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||||||||||||| ||||||||| | || | | |||| |||||||||| |||||||| |||||||||||||||||||||| |
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| T |
25868277 |
tatcagcctaaagtggtattgca-ctctctatttctcagactgcttttcccttcttgctgcatatttctgagcactatat |
25868199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 25868486 - 25868412
Alignment:
| Q |
342 |
aacaggtttttgtt-gacagaacagaatttatatactataattgaacattatgtctttccttttctagtatattt |
415 |
Q |
| |
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||||||||||| || ||||||||| ||||| |||||| ||||||||||| ||| ||||||||| |||||||||| |
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| T |
25868486 |
aacaggtttttatttgacagaacataatttgtatactgtaattgaacatgctgtttttccttttatagtatattt |
25868412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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