View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_high_15 (Length: 311)
Name: NF13090_high_15
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 35197532 - 35197237
Alignment:
| Q |
16 |
agtcacaccttggaaagtagaccataagaagcaaagctatagaaaaatccagtaaggaaactggtcatacacggtcttttaacaacagaatctaccactt |
115 |
Q |
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| T |
35197532 |
agtcacaccttggaaagtagaccataagaagcaaagctatagaaaaatccagtaaggaaactggtcatacacggtcttttaacaacagaatctaccactt |
35197433 |
T |
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| Q |
116 |
atggctttggactctagtttatggaagtttcaagtatattcaatcctgtggggccttttagaatgtttgtgagggacttttctactgtattattgttgtt |
215 |
Q |
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| T |
35197432 |
atggctttggactctagtttatggaagtttcaagtatattcaatcctgtggggccttttagaatgtttgtgagggacttttctactgtattattgttgtt |
35197333 |
T |
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| Q |
216 |
atgttatatatactttactgagagatgcttcaatatgattattttaatgttttcctatttcccttgggatgggtgtgggagcttaaaatgatagtc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35197332 |
atgttatatatactttactgagagatgcttcaatatgattattttaatgttttcctatttcccttggaatgggtgtgggagcttaaaatgatagtc |
35197237 |
T |
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