View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13090_high_16 (Length: 303)

Name: NF13090_high_16
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13090_high_16
NF13090_high_16
[»] chr8 (3 HSPs)
chr8 (1-295)||(41147414-41147708)
chr8 (1-224)||(41172295-41172521)
chr8 (1-161)||(41164178-41164338)
[»] chr1 (4 HSPs)
chr1 (1-209)||(32582408-32582616)
chr1 (1-173)||(32631654-32631826)
chr1 (1-173)||(32657546-32657718)
chr1 (237-293)||(32600499-32600555)
[»] chr6 (2 HSPs)
chr6 (5-185)||(26398421-26398601)
chr6 (11-71)||(26405045-26405105)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-190)||(21729-21919)
[»] chr5 (1 HSPs)
chr5 (5-185)||(21015813-21015993)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 41147414 - 41147708
Alignment:
Q  1 tcaacagaaccttgaacgttgcagttacactttccttgttttcctctcccaacaagatctgtttcagtagtagaatttgaaccatctttaacaggccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  41147414 tcaacagaaccttgaacgttgcagttacactttccttgtcttcctctcccaacaagatctgtttcggtagtagaatttgaaccatctttaacaggccata 41147513  T
Q  101 cttgtgtgcctaaccatttagagtcactctcagaaactacaccagtccattccggaacttccacttgaaaaaggtggcctacagaaacaaccttttcacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41147514 cttgtgtgcctaaccatttagagtcactctcagaaactacaccagtccattccggaacttccacttgaaaaaggtggcctacagaaacaaccttttcacg 41147613  T
Q  201 aaaatcatccatagatggctcagannnnnnnnnnnngatcacgacatctggtttgacagttgttttttccagaggacacttttctgatttcatct 295  Q
    |||||||||| |||||||||||||            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41147614 aaaatcatccgtagatggctcagattttttctttttgatcacgacatctggtttgccagttgttttttccagaggacacttttctgatttcatct 41147708  T

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Target: chr8; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41172295 - 41172521
Alignment:
Q  1 tcaacagaaccttgaacgttgcagttacactttccttgttttcctctcccaacaagatctgtttcagtagtagaatttgaaccatctttaacaggccatt 100  Q
    |||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||| |||||||  |||||| |||||||||||||||||     
T  41172295 tcaacagaaccttgaacgttgcagctacaccttcctcgtcttcctctcccaacaagatctgtttcggtagtaggttttgaatcatctttaacaggccata 41172394  T
Q  101 cttgtgtgcctaaccatttagagtcactctcagaaactacaccagtccattccggaacttccacttgaaaaaggtggcctacagaaacaaccttttcacg 200  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| || ||||| ||||| ||||||| |||||||||    
T  41172395 cttgtgtgcctgaccatttagagtcactctcagaaactataccagtccactccggaacttccgcttggaacaggtgacctacggaaacaagcttttcacg 41172494  T
Q  201 aaa---atcatccatagatggctcaga 224  Q
    |||   |||||||||||||||||||||    
T  41172495 aaaatcatcatccatagatggctcaga 41172521  T

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Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 41164178 - 41164338
Alignment:
Q  1 tcaacagaaccttgaacgttgcagttacactttccttgttttcctctcccaacaagatctgtttcagtagtagaatttgaaccatctttaacaggccatt 100  Q
    ||||||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||| |||||||  |||||| |||||||||||||||||     
T  41164178 tcaacagaaccttgaacattgtagctacactttcctcgtcttcctctcccaacaagatctgtttctgtagtaggttttgaatcatctttaacaggccata 41164277  T
Q  101 cttgtgtgcctaaccatttagagtcactctcagaaactacaccagtccattccggaacttc 161  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||    
T  41164278 cttgtgtgcctaaccatttagagtcactctcataaactacaccggtccattgcgggacttc 41164338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 32582408 - 32582616
Alignment:
Q  1 tcaacagaaccttgaacgttgcagttacactttccttgttttcctctcccaacaagatctgtttcagtagtagaatttgaaccatctttaacaggccatt 100  Q
    ||||| ||||||||||| |||||| ||||||||||| || ||||||| ||||||||||||||||| |||||||   ||||| |||||||||||||||||     
T  32582408 tcaactgaaccttgaacattgcagctacactttcctcgtcttcctctaccaacaagatctgtttctgtagtaggtcttgaatcatctttaacaggccata 32582507  T
Q  101 cttgtgtgcctaaccatttagagtcactctcagaaactacaccagtccattccggaacttccacttgaaaaaggtggcctacagaaacaaccttttcacg 200  Q
    |||||||||||||| |||||||||||||| || |||||||||||||||||| ||| ||||||||||| |||||  | || |||||||||||||| |||||    
T  32582508 cttgtgtgcctaacgatttagagtcactcccataaactacaccagtccattgcgggacttccacttggaaaagaggaccaacagaaacaaccttatcacg 32582607  T
Q  201 aaaatcatc 209  Q
    | |||||||    
T  32582608 agaatcatc 32582616  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 32631654 - 32631826
Alignment:
Q  1 tcaacagaaccttgaacgttgcagttacactttccttgttttcctctcccaacaagatctgtttcagtagtagaatttgaaccatctttaacaggccatt 100  Q
    ||||| ||||||||||| |||||| ||||||||||| || ||||||| |||| |||||||||||| |||||||   ||||| |||||||||||||||||     
T  32631654 tcaactgaaccttgaacattgcagctacactttcctcgtcttcctctaccaataagatctgtttctgtagtaggtcttgaatcatctttaacaggccata 32631753  T
Q  101 cttgtgtgcctaaccatttagagtcactctcagaaactacaccagtccattccggaacttccacttgaaaaag 173  Q
    |||||||||||||  |||||||||||||| || |||||| |||||||||||  || ||||||||||| |||||    
T  32631754 cttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaag 32631826  T

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Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 32657546 - 32657718
Alignment:
Q  1 tcaacagaaccttgaacgttgcagttacactttccttgttttcctctcccaacaagatctgtttcagtagtagaatttgaaccatctttaacaggccatt 100  Q
    ||||| ||||||||||| |||||| |||||||||||||| ||||||| |||| |||||||||||| || ||||   ||||| |||||||||||||||||     
T  32657546 tcaactgaaccttgaacattgcagctacactttccttgtcttcctctaccaataagatctgtttctgtggtaggtcttgaatcatctttaacaggccata 32657645  T
Q  101 cttgtgtgcctaaccatttagagtcactctcagaaactacaccagtccattccggaacttccacttgaaaaag 173  Q
    |||||||||||||  |||||||||||||| || |||||| |||||||||||  || ||||||||||| |||||    
T  32657646 cttgtgtgcctaaagatttagagtcactcccataaactataccagtccattgtgggacttccacttggaaaag 32657718  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 32600499 - 32600555
Alignment:
Q  237 gatcacgacatctggtttgacagttgttttttccagaggacacttttctgatttcat 293  Q
    ||||||||||||||||||| |||||||||| |||| |||||  ||||||||||||||    
T  32600499 gatcacgacatctggtttgccagttgttttctccataggacttttttctgatttcat 32600555  T

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Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 26398421 - 26398601
Alignment:
Q  5 cagaaccttgaacgttgcagttacactttccttgttttcctctcccaacaagatctgtttcagtagtagaatttgaaccatctttaacaggccattcttg 104  Q
    ||||||||||||| |||||| ||||| ||||| |  || |||||||||||||||||||||| |||||||  |||||| | || |||||||||||| ||||    
T  26398421 cagaaccttgaactttgcagctacacattcctcgcctttctctcccaacaagatctgtttctgtagtaggttttgaatcctcattaacaggccatacttg 26398520  T
Q  105 tgtgcctaaccatttagagtcactctcagaaactacaccagtccattccggaacttccacttgaaaaaggtggcctacaga 185  Q
    ||||||||| |||||||| ||||||||| ||||||||||||| |||| ||| | |||| |||| ||| | || ||||||||    
T  26398521 tgtgcctaagcatttagaatcactctcataaactacaccagtacattgcgggagttccgcttggaaacgatgacctacaga 26398601  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 26405045 - 26405105
Alignment:
Q  11 cttgaacgttgcagttacactttccttgttttcctctcccaacaagatctgtttcagtagt 71  Q
    ||||||| |||||| |||||||||||  | ||||||||||||||||||||||||| |||||    
T  26405045 cttgaacattgcagctacactttcctcatcttcctctcccaacaagatctgtttcggtagt 26405105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 21729 - 21919
Alignment:
Q  1 tcaacagaaccttgaacgtt-gcagttacactttccttgttttcctctcccaacaagatctgtttcagtagtagaatttgaaccatctttaacaggccat 99  Q
    ||||| ||||||||||| || |||| ||||||||||| || ||||||| |||| |||||||||||| |||||||   ||||| ||||||||||||||||     
T  21729 tcaactgaaccttgaacatttgcagctacactttcctcgtcttcctctaccaataagatctgtttctgtagtaggtcttgaatcatctttaacaggccaa 21828  T
Q  100 tcttgtgtgcctaaccatttagagtcactctcagaaactacaccagtccattccggaacttccacttgaaaaaggtggcctacagaaacaa 190  Q
      ||||||||||||| |||||||||||||| || |||| |||||||||||||  || ||||||||||| |||||  | || ||||||||||    
T  21829 atttgtgtgcctaacaatttagagtcactcccataaacaacaccagtccattgtgggacttccacttggaaaagaggaccaacagaaacaa 21919  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 21015993 - 21015813
Alignment:
Q  5 cagaaccttgaacgttgcagttacactttccttgttttcctctcccaacaagatctgtttcagtagtagaatttgaaccatctttaacaggccattcttg 104  Q
    ||||||||||||| |||||| ||||| ||||| |  || ||||||||||||||| |||||| |||||||  |||||| | |  |||||||||||| ||||    
T  21015993 cagaaccttgaactttgcagctacacattcctcgcctttctctcccaacaagatatgtttctgtagtaggttttgaatcctaattaacaggccatacttg 21015894  T
Q  105 tgtgcctaaccatttagagtcactctcagaaactacaccagtccattccggaacttccacttgaaaaaggtggcctacaga 185  Q
    ||||||||| |||||||||||||||||| ||||||||| ||| |||| ||| | ||||||||| ||| | || ||||||||    
T  21015893 tgtgcctaagcatttagagtcactctcataaactacactagtacattgcgggagttccacttggaaacgatgacctacaga 21015813  T

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