View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_high_20 (Length: 278)
Name: NF13090_high_20
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 25416317 - 25416066
Alignment:
| Q |
20 |
tacataagagcgcgggaaaagcaagaatctttggcaccaaaagacgttactataaataagtttgtgtgtataccgatcggaagttgaaaaagagaggaaa |
119 |
Q |
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| T |
25416317 |
tacataagagcgcgggaaaagcaagaatctttggcaccaaaagacgttactataaataagtttgtgtgtataccgatcggaagttgaaaaagagaggaaa |
25416218 |
T |
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| Q |
120 |
aagatgcagattcgtatacagtgcaattgtgaggaaggaaactgtgtggaatggggcattgttgaactgcaaggagttgttgaaccacaacctggttttc |
219 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25416217 |
aagatgcagattcgtgtacagtgcaattgtgaggaaggaaactgtgtggaatggggcattgttgaactgcaaggagttgttgaaccacagcctggttttc |
25416118 |
T |
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| Q |
220 |
aggattcccttgccaaccttcaaattggcactctctgtcgtccttcatctca |
271 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
25416117 |
aggattcccttgccaaccttcaaattggcactctctgccgtccttcttctca |
25416066 |
T |
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