View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_high_21 (Length: 262)
Name: NF13090_high_21
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 120 - 258
Target Start/End: Complemental strand, 11100339 - 11100201
Alignment:
| Q |
120 |
cttcaaggtagtaaatcaggccaaactccagaattgagctcaccaaatggcactgtctcttgcagattatcagccaccattgagtccatcaataattgac |
219 |
Q |
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| T |
11100339 |
cttcaaggtaataaatcaggccaaactccagaattgacctcaccaaatggcactgtccctgtcacattaccagccaccattgagtccatcaataattgtc |
11100240 |
T |
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| Q |
220 |
tttgcataatgtcatcattattaataggtatcccaacat |
258 |
Q |
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| T |
11100239 |
tttgcataatgtcatcattattaataggtatcccaacat |
11100201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 10987462 - 10987322
Alignment:
| Q |
106 |
aaatacatgattttcttcaaggtagtaaatcaggccaaactccagaattgagctcaccaaatggcactgtctcttgcagattatcagccaccattgagtc |
205 |
Q |
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| T |
10987462 |
aaatacatgatttctttcaaggaagtaaatcagaccagactccagaattgacctcaccaaatggcactgtctctgtcacattaccagccaccattgagtc |
10987363 |
T |
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| Q |
206 |
catcaataattgactttgcataatgtcatcattattaatag |
246 |
Q |
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| T |
10987362 |
catcaataattgactttgcataatgtcatcattattaatag |
10987322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 11107164 - 11107074
Alignment:
| Q |
120 |
cttcaaggtagtaaatcaggccaaactccagaattgagctcaccaaatggcactgtctcttgcagattatcagccaccattgagtccatca |
210 |
Q |
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| T |
11107164 |
cttcaaggtaataaatgaggccaaactccagaattgacctcaccaaatggcactgtcccttgcagattaccagccaccattgagtccatca |
11107074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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