View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_high_24 (Length: 249)
Name: NF13090_high_24
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 10987251 - 10987094
Alignment:
| Q |
1 |
gatttgattttgatcattgttatcccatgcttccaaacgtctagcaacgtccttcaaattgtggtcaatcaaccaagcaagataactcatatccattgtt |
100 |
Q |
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| T |
10987251 |
gatttgattttgatcattgttatcccatgcttccaaacgtctagcaacgtccttcaatttatggtcaatcaaccaagcaagataactcatatccattgtt |
10987152 |
T |
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| Q |
101 |
gacatattgtcgtacacaactctaccttcattgagacattgagacatgattattgtca |
158 |
Q |
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| T |
10987151 |
gacatattgtcgtgcacaactctaccttcattgagacattgagacatgattattgtca |
10987094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 11106961 - 11106804
Alignment:
| Q |
1 |
gatttgattttgatcattgttatcccatgcttccaaacgtctagcaacgtccttcaaattgtggtcaatcaaccaagcaagataactcatatccattgtt |
100 |
Q |
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| T |
11106961 |
gatttgattttgatcattgatatcacatgcttccaaacgtctagcaacatccttcaaattgtggtcaatcaaccaagcaagataactcatatccattgtt |
11106862 |
T |
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| Q |
101 |
gacatattgtcgtacacaactctaccttcattgagacattgagacatgattattgtca |
158 |
Q |
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| T |
11106861 |
gacatattgtcttgcacaactctaccttcactaagacattgagtcatgagtaatgtca |
11106804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 11096236 - 11096109
Alignment:
| Q |
31 |
ttccaaacgtctagcaacgtccttcaaattgtggtcaatcaaccaagcaagataactcatatccattgttgacatattgtcgtacacaactctaccttca |
130 |
Q |
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| T |
11096236 |
ttccaaacgtctaccaatgtccttcaaattatggtcaatcaaccaagaaagatcactcaaatcatctgttggcaaattgtcgtgcacaactttaccttca |
11096137 |
T |
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| Q |
131 |
ttgagacattgagacatgattattgtca |
158 |
Q |
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| T |
11096136 |
ttaagacattgagtcatgagtaatgtca |
11096109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 11100126 - 11100051
Alignment:
| Q |
14 |
tcattgttatcccatgcttccaaacgtctagcaacgtccttcaaattgtggtcaatcaaccaagcaagataactca |
89 |
Q |
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| T |
11100126 |
tcattgttatcccacgcttccaaacgtctaccaacatcgatcaaattatggtcaatcaaccaagaaagataactca |
11100051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 10987047 - 10987018
Alignment:
| Q |
205 |
agccttcaaaacactttgtgtcaagaaagt |
234 |
Q |
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| T |
10987047 |
agccttcaaaacactttgtgtcaagaaagt |
10987018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 13308660 - 13308578
Alignment:
| Q |
1 |
gatttgattttgatcattgttatcccatgcttccaaacgtctagcaacgtccttcaaattgtggtcaatcaaccaagcaagat |
83 |
Q |
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| T |
13308660 |
gatttgattttgaccattattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaaccaagcaagat |
13308578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 15076107 - 15076074
Alignment:
| Q |
50 |
tccttcaaattgtggtcaatcaaccaagcaagat |
83 |
Q |
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| T |
15076107 |
tccttcaaattttggtcaatcaaccaagcaagat |
15076074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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