View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13090_high_26 (Length: 245)

Name: NF13090_high_26
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13090_high_26
NF13090_high_26
[»] chr8 (43 HSPs)
chr8 (16-230)||(7121667-7121891)
chr8 (16-186)||(16940157-16940337)
chr8 (16-184)||(13782249-13782427)
chr8 (16-136)||(38134027-38134149)
chr8 (16-228)||(41471063-41471284)
chr8 (16-191)||(36595827-36596012)
chr8 (28-229)||(43520669-43520880)
chr8 (16-136)||(36345813-36345942)
chr8 (78-187)||(34892762-34892871)
chr8 (16-136)||(22961386-22961515)
chr8 (78-186)||(40740918-40741026)
chr8 (78-189)||(13783061-13783172)
chr8 (16-189)||(35206541-35206724)
chr8 (16-136)||(3085577-3085707)
chr8 (16-136)||(37655973-37656103)
chr8 (72-189)||(3086378-3086495)
chr8 (80-191)||(29034056-29034167)
chr8 (78-186)||(37656759-37656866)
chr8 (24-135)||(39513102-39513223)
chr8 (19-76)||(39208302-39208359)
chr8 (80-196)||(39512315-39512431)
chr8 (78-187)||(39207648-39207756)
chr8 (78-185)||(16939393-16939500)
chr8 (78-183)||(7120914-7121020)
chr8 (72-136)||(41471982-41472047)
chr8 (78-136)||(35205876-35205934)
chr8 (90-161)||(20861868-20861939)
chr8 (16-63)||(34892063-34892110)
chr8 (90-162)||(42731861-42731933)
chr8 (122-167)||(18441438-18441483)
chr8 (72-163)||(3641681-3641772)
chr8 (90-136)||(44885751-44885797)
chr8 (90-163)||(31745217-31745290)
chr8 (122-170)||(28645401-28645449)
chr8 (122-170)||(28649985-28650033)
chr8 (103-134)||(36595054-36595085)
chr8 (121-163)||(17924279-17924321)
chr8 (146-184)||(34892024-34892062)
chr8 (121-163)||(43262456-43262498)
chr8 (122-171)||(26451507-26451556)
chr8 (124-173)||(28646246-28646295)
chr8 (124-173)||(28650830-28650879)
chr8 (16-61)||(45410253-45410298)
[»] chr7 (24 HSPs)
chr7 (16-186)||(14102229-14102409)
chr7 (16-186)||(14412246-14412426)
chr7 (16-185)||(13645223-13645402)
chr7 (16-184)||(19072451-19072629)
chr7 (16-162)||(48001256-48001412)
chr7 (72-229)||(11885928-11886084)
chr7 (16-153)||(47751066-47751213)
chr7 (16-136)||(31512920-31513050)
chr7 (78-186)||(38555366-38555474)
chr7 (78-186)||(13644433-13644541)
chr7 (16-77)||(12027578-12027639)
chr7 (38-136)||(38555126-38555234)
chr7 (16-136)||(30846704-30846832)
chr7 (78-136)||(30845987-30846045)
chr7 (16-77)||(11886114-11886176)
chr7 (78-134)||(14101486-14101542)
chr7 (78-134)||(14411503-14411559)
chr7 (122-173)||(41047802-41047853)
chr7 (121-169)||(31323078-31323126)
chr7 (123-170)||(37340330-37340377)
chr7 (124-163)||(42795112-42795151)
chr7 (121-163)||(17834522-17834564)
chr7 (121-163)||(29112408-29112450)
chr7 (124-173)||(47060951-47061000)
[»] chr3 (38 HSPs)
chr3 (16-186)||(10658835-10659007)
chr3 (16-186)||(45075358-45075538)
chr3 (16-229)||(19842473-19842695)
chr3 (16-186)||(7941887-7942066)
chr3 (16-229)||(11270165-11270388)
chr3 (16-222)||(6143647-6143863)
chr3 (16-189)||(32592226-32592405)
chr3 (16-136)||(32743243-32743373)
chr3 (78-186)||(45076202-45076311)
chr3 (78-186)||(7941122-7941230)
chr3 (16-155)||(26494384-26494533)
chr3 (16-185)||(4274831-4275010)
chr3 (19-148)||(20484682-20484821)
chr3 (78-189)||(32593065-32593176)
chr3 (16-137)||(39999460-39999591)
chr3 (78-163)||(20485484-20485569)
chr3 (78-163)||(51755803-51755888)
chr3 (90-189)||(14043863-14043962)
chr3 (16-77)||(4330969-4331029)
chr3 (78-136)||(50330648-50330706)
chr3 (80-143)||(30294827-30294890)
chr3 (72-148)||(31890188-31890265)
chr3 (107-163)||(2062421-2062477)
chr3 (78-136)||(4274122-4274180)
chr3 (72-153)||(6525264-6525346)
chr3 (150-191)||(50330619-50330660)
chr3 (121-161)||(10492869-10492909)
chr3 (72-136)||(34722287-34722351)
chr3 (121-163)||(8156543-8156585)
chr3 (125-163)||(9582582-9582620)
chr3 (121-163)||(16484452-16484494)
chr3 (121-163)||(19341590-19341632)
chr3 (121-163)||(43478826-43478868)
chr3 (76-109)||(26493643-26493676)
chr3 (122-179)||(41577094-41577151)
chr3 (121-173)||(16851148-16851200)
chr3 (150-186)||(39999578-39999614)
chr3 (121-165)||(48566375-48566419)
[»] chr2 (30 HSPs)
chr2 (16-186)||(33222628-33222808)
chr2 (16-222)||(29407768-29407984)
chr2 (16-228)||(28138550-28138773)
chr2 (16-165)||(28419440-28419600)
chr2 (16-186)||(2271619-2271798)
chr2 (16-229)||(12252373-12252586)
chr2 (16-136)||(14002555-14002685)
chr2 (16-136)||(37322018-37322148)
chr2 (78-186)||(28139509-28139618)
chr2 (16-185)||(23266125-23266282)
chr2 (78-191)||(16544378-16544491)
chr2 (78-186)||(29406984-29407093)
chr2 (72-230)||(16544564-16544721)
chr2 (16-77)||(40156640-40156701)
chr2 (72-136)||(6232701-6232765)
chr2 (78-148)||(37294379-37294449)
chr2 (28-77)||(37294787-37294836)
chr2 (80-185)||(1728774-1728882)
chr2 (72-163)||(30271109-30271200)
chr2 (72-163)||(30273097-30273188)
chr2 (16-54)||(6232762-6232800)
chr2 (72-136)||(37893346-37893411)
chr2 (120-191)||(40156406-40156477)
chr2 (121-163)||(3943188-3943230)
chr2 (121-163)||(7189947-7189989)
chr2 (121-163)||(41004563-41004605)
chr2 (121-170)||(36255709-36255758)
chr2 (122-163)||(41500231-41500272)
chr2 (121-173)||(4015102-4015154)
chr2 (121-165)||(5351728-5351772)
[»] chr5 (19 HSPs)
chr5 (16-189)||(35671091-35671274)
chr5 (16-229)||(30192461-30192684)
chr5 (16-163)||(42912758-42912916)
chr5 (16-185)||(35282275-35282460)
chr5 (16-136)||(41622209-41622339)
chr5 (78-222)||(40789160-40789304)
chr5 (16-77)||(2170451-2170512)
chr5 (16-77)||(20743869-20743930)
chr5 (72-136)||(20743966-20744030)
chr5 (90-186)||(41623013-41623109)
chr5 (78-161)||(2169724-2169807)
chr5 (72-153)||(30966590-30966672)
chr5 (78-136)||(35671984-35672042)
chr5 (36-77)||(13590537-13590578)
chr5 (41-77)||(13580688-13580724)
chr5 (72-166)||(30966122-30966216)
chr5 (122-179)||(18307273-18307330)
chr5 (112-163)||(42098338-42098389)
chr5 (121-161)||(25877658-25877698)
[»] chr6 (16 HSPs)
chr6 (19-162)||(15546273-15546426)
chr6 (16-165)||(35096671-35096830)
chr6 (16-136)||(11159312-11159442)
chr6 (16-136)||(117776-117906)
chr6 (16-184)||(17338658-17338823)
chr6 (78-165)||(11157769-11157856)
chr6 (90-163)||(15888765-15888838)
chr6 (16-58)||(32396523-32396565)
chr6 (16-61)||(26350377-26350422)
chr6 (121-187)||(11157721-11157787)
chr6 (135-185)||(35177616-35177666)
chr6 (130-170)||(8192370-8192410)
chr6 (111-163)||(9049070-9049122)
chr6 (121-163)||(8193205-8193247)
chr6 (121-163)||(17597520-17597562)
chr6 (125-189)||(29097828-29097892)
[»] chr4 (25 HSPs)
chr4 (16-186)||(18884385-18884565)
chr4 (16-229)||(2449493-2449712)
chr4 (16-229)||(48807266-48807490)
chr4 (28-229)||(11565835-11566046)
chr4 (16-136)||(37296092-37296222)
chr4 (19-136)||(37855895-37856022)
chr4 (78-186)||(43176581-43176689)
chr4 (16-136)||(43175769-43175899)
chr4 (72-189)||(48806494-48806612)
chr4 (78-136)||(2449012-2449070)
chr4 (82-186)||(37856701-37856805)
chr4 (31-111)||(27872443-27872523)
chr4 (78-148)||(6092708-6092778)
chr4 (16-61)||(28235164-28235209)
chr4 (16-50)||(16473161-16473195)
chr4 (104-163)||(20209306-20209365)
chr4 (125-163)||(4783681-4783719)
chr4 (121-163)||(34503744-34503786)
chr4 (124-173)||(17342167-17342216)
chr4 (102-163)||(20208545-20208606)
chr4 (120-165)||(28234475-28234520)
chr4 (125-173)||(955817-955865)
chr4 (122-170)||(958591-958639)
chr4 (121-165)||(26932617-26932661)
chr4 (90-130)||(53536844-53536884)
[»] scaffold0092 (1 HSPs)
scaffold0092 (19-229)||(54534-54754)
[»] chr1 (30 HSPs)
chr1 (16-163)||(18609780-18609933)
chr1 (10-187)||(5329888-5330076)
chr1 (16-148)||(12628016-12628158)
chr1 (72-183)||(13760991-13761102)
chr1 (16-134)||(21699939-21700068)
chr1 (16-136)||(42290332-42290462)
chr1 (76-158)||(21268717-21268799)
chr1 (16-136)||(7943010-7943134)
chr1 (100-189)||(41909680-41909769)
chr1 (16-77)||(51461187-51461248)
chr1 (78-136)||(12627275-12627333)
chr1 (78-162)||(41908978-41909062)
chr1 (78-136)||(5329159-5329217)
chr1 (90-166)||(15695826-15695902)
chr1 (72-153)||(13760812-13760894)
chr1 (90-135)||(48455531-48455576)
chr1 (121-189)||(29425332-29425400)
chr1 (125-166)||(11828200-11828241)
chr1 (121-160)||(45780267-45780306)
chr1 (121-163)||(9710613-9710655)
chr1 (121-163)||(20353931-20353973)
chr1 (121-163)||(26606833-26606875)
chr1 (121-163)||(44598902-44598944)
chr1 (121-191)||(46217314-46217384)
chr1 (121-163)||(47652729-47652771)
chr1 (121-166)||(45943722-45943767)
chr1 (150-186)||(5329135-5329171)
chr1 (125-165)||(5750344-5750384)
chr1 (121-165)||(31783711-31783755)
chr1 (143-227)||(49661751-49661835)
[»] scaffold0019 (1 HSPs)
scaffold0019 (16-229)||(127470-127684)
[»] scaffold0217 (1 HSPs)
scaffold0217 (16-77)||(8832-8893)
[»] scaffold0065 (1 HSPs)
scaffold0065 (112-186)||(65330-65404)
[»] scaffold1379 (1 HSPs)
scaffold1379 (89-163)||(398-472)
[»] scaffold0283 (1 HSPs)
scaffold0283 (90-136)||(1604-1650)
[»] scaffold0494 (2 HSPs)
scaffold0494 (121-171)||(858-908)
scaffold0494 (121-165)||(890-934)
[»] scaffold0388 (1 HSPs)
scaffold0388 (121-163)||(13905-13947)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 43)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 7121667 - 7121891
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||||||||||    
T  7121667 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 7121766  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaagga 205  Q
    | ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||| || ||| |||||||||||||||||| | || | |  |  |     
T  7121767 agttcaggtttgaaattcctcggcagttaactgccgaagttttcctcagcagttaactgcagccggttctttaaaatttcgacagttaactgccgagagg 7121866  T
Q  206 catttgaataatttacttgtgtttt 230  Q
    ||||||| |||||||||||||||||    
T  7121867 catttgagtaatttacttgtgtttt 7121891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 16940157 - 16940337
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||          |||||||||||| |||||||||||||||||    
T  16940157 atcatatgaatgaaatcataaaaataattatttttaattccttaaaatgattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 16940256  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    ||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||| |||||| |||||||||||||||    
T  16940257 atttcaggtttgaaattcctcggcagttaactgccgaaattttcctcgacagttaactgcaaccggttctttaaaatttcg 16940337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 13782427 - 13782249
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          ||||||||||| ||||||||||||||||    
T  13782427 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaatgattaaagaattaaatttaattaaggaaaatttatttgtatttccttattta 13782328  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaattt 184  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||  || |||||||||||||    
T  13782327 atttcaggtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaattgcagtcggttctttaaaattt 13782249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 38134027 - 38134149
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag--aattaaggaaaatttatgtgtatttccttatttaatttcagg 113  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  38134027 atcatatgaatgaaatcataaaaataattatgtataatttcttaaaagaattaaatttaattaaggaaaatttatgtgtatttccttatttaatttcagg 38134126  T
Q  114 tttgaaattcctcggcagttaac 136  Q
    |||||||||||||||||||||||    
T  38134127 tttgaaattcctcggcagttaac 38134149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 41471284 - 41471063
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||| ||||||||||||||    
T  41471284 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttatgtatatttccttattta 41471185  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaagga 205  Q
    |||| || ||| ||||| ||||| ||||||| ||| ||||||| ||||  |||||||| || |||||||||||||||||||||| | || |    |||||    
T  41471184 attttagatttaaaatttctcggtagttaactgcc-aagttttcctcgaaagttaactgcagccgattctttaaaatttcgacagttaactgtcgaagga 41471086  T
Q  206 catttgaataatttacttgtgtt 228  Q
    ||||||| ||||||||| |||||    
T  41471085 catttgagtaatttactcgtgtt 41471063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 36595827 - 36596012
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaag----------gaaaatttatgtgtatttccttattta 105  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||           ||||||||| |||||||| ||||||||    
T  36595827 atcatacgaatgaaatcacaaaaataattatgtttaattcattaaaaagattaaagaattaaattaaattaacgaaaatttaggtgtattttcttattta 36595926  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaat 191  Q
    ||||||||||||||||||||||||||||||| ||  ||||||| |||||||||||||| || ||| ||||||||||||||||||||    
T  36595927 atttcaggtttgaaattcctcggcagttaactgcttaagttttcctcggcagttaactgcagccggttctttaaaatttcgacaat 36596012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 43520669 - 43520880
Alignment:
Q  28 aaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttatttaatttcaggtttg 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||          | |||||||||||| |||| |||||||||||||| |||||    
T  43520669 aaatcattaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaagaaaaatttatgtgcattttcttatttaatttcatgtttg 43520768  T
Q  118 aaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaaggacatttgaataat 217  Q
    ||||||||||| ||||||| ||||||||||| ||| |||||||||| || ||||||||||||||||||| || | || | |  | | |||||||||||||    
T  43520769 aaattcctcggtagttaactgccgaagttttcctcagcagttaactgcagccgattctttaaaatttcggcagttaactgccgatgaacatttgaataat 43520868  T
Q  218 ttacttgtgttt 229  Q
    ||||| ||||||    
T  43520869 ttactcgtgttt 43520880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 36345813 - 36345942
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||          |||||||||||| |||||||||||||||||    
T  36345813 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaag-attaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 36345911  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||||||||||||||||||||||||    
T  36345912 atttcaggtttgaaattcctcggcagttaac 36345942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 34892762 - 34892871
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||  || ||||||    
T  34892762 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaactgcagtcggttcttt 34892861  T
Q  178 aaaatttcga 187  Q
    ||||||||||    
T  34892862 aaaatttcga 34892871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 22961386 - 22961515
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaagg-------attaaag--aattaaggaaaatttatgtgtatttccttatttaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||   |||||||||||||||| |||||||||||||| |||    
T  22961386 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggttaaagaattaaatttaattaaggaaaatttaggtgtatttccttatgtaa 22961485  T
Q  107 tttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||||||||||||||||||||||||||    
T  22961486 tttcaggtttgaaattcctcggcagttaac 22961515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 40741026 - 40740918
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| || ||| ||||||    
T  40741026 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaaatcctcggcagttaactgccgaagttttcctcggcagttaactgcagccggttcttt 40740927  T
Q  178 aaaatttcg 186  Q
    |||||||||    
T  40740926 aaaatttcg 40740918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 13783061 - 13783172
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||| || ||| ||||||    
T  13783061 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcttcgacagttaactgccgaagttttcctcggcagttaactgcagccggttcttt 13783160  T
Q  178 aaaatttcgaca 189  Q
    ||||||||||||    
T  13783161 aaaatttcgaca 13783172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 35206541 - 35206724
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag----------aattaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||          ||||||| |||||||| |||||||||||||||||    
T  35206541 atcatatgaataaaatcataaaaagaattatgtttaattccttaaaaggattaaagaattaaatttaattaagaaaaatttaggtgtatttccttattta 35206640  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgaca 189  Q
    ||||||||||| ||||| |||| |||||||| ||| |  |||| |||| ||||||||| || |||  |||||||||||| ||||    
T  35206641 atttcaggtttaaaatttctcgacagttaactgccaagattttcctcgacagttaactgcagccggctctttaaaatttggaca 35206724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 3085707 - 3085577
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaa----------ttaaggaaaatttatgtgtatttccttattta 105  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||          |||||||||||||| |||||||||||||||||    
T  3085707 atcatatgaatgaaattataaaaataattatgtttaatttcttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 3085608  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    |||||| | ||||||||||||||||||||||    
T  3085607 atttcaaggttgaaattcctcggcagttaac 3085577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 37656103 - 37655973
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaaga----------attaaggaaaatttatgtgtatttccttattta 105  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||          |||||| |||||||| |||||||||||||||||    
T  37656103 atcatacgaatgaaatcataaaaataattatgtttaattccttaaaaagattaaagatttaaatttaattaagaaaaatttaggtgtatttccttattta 37656004  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    |||||| ||||||||||||||||||||||||    
T  37656003 atttcaagtttgaaattcctcggcagttaac 37655973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 3086378 - 3086495
Alignment:
Q  72 aattaaggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccga 171  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||   || ||| |||||| || |||     
T  3086378 aattaaggaaaatttaggtgtatttccttatttaatttcaagtttgaaattcctcggcagttaactgccgaaatttagatcagcaattaactgcagccgg 3086477  T
Q  172 ttctttaaaatttcgaca 189  Q
    ||||||||||||||||||    
T  3086478 ttctttaaaatttcgaca 3086495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 29034167 - 29034056
Alignment:
Q  80 aaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaa 179  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||  ||||||||||||| || ||  ||| ||||    
T  29034167 aaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcgatagttaaccaccgaagttttcatcggcagttaactgcagccagttcgttaa 29034068  T
Q  180 aatttcgacaat 191  Q
    ||||||||||||    
T  29034067 aatttcgacaat 29034056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 37656759 - 37656866
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| || |||||||||| ||| ||| ||||||    
T  37656759 ggaaaatttaggtgtatttccttatttaatttcatgtttgaaattccttggcagttaactgccgaagttttcct-ggcagttaacaacagccggttcttt 37656857  T
Q  178 aaaatttcg 186  Q
    |||| ||||    
T  37656858 aaaaattcg 37656866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 39513102 - 39513223
Alignment:
Q  24 aatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttatttaatttcagg 113  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||          | ||||| || |||||||||||||||||||||||||    
T  39513102 aatgaaatcatagaaataattatgtttaattccttaaaaagattaaagaattaaatttaattaagaaaaatataggtgtatttccttatttaatttcagg 39513201  T
Q  114 tttgaaattcctcggcagttaa 135  Q
    |||||||||||||| |||||||    
T  39513202 tttgaaattcctcgacagttaa 39513223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 39208302 - 39208359
Alignment:
Q  19 atatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatta 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39208302 atatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatta 39208359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 80 - 196
Target Start/End: Complemental strand, 39512431 - 39512315
Alignment:
Q  80 aaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaa 179  Q
    ||||||||  ||||||||||||||||||||||||||| ||||| |||  || ||||| |||||| ||||||| | ||||||||| ||  |||||||||||    
T  39512431 aaaatttagatgtatttccttatttaatttcaggtttaaaatttctcaacaattaactgccgaaatttttctggacagttaactgcagtcgattctttaa 39512332  T
Q  180 aatttcgacaataaatt 196  Q
    |||||||||||| ||||    
T  39512331 aatttcgacaattaatt 39512315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 39207756 - 39207648
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||  || | |||||||| || ||  ||||||    
T  39207756 ggaaaatttaggtgtatttccttatttaatttcagatttaaaattcctcggcagttaactgtcgaagttttcatc-gtagttaactgcagccagttcttt 39207658  T
Q  178 aaaatttcga 187  Q
    ||||||||||    
T  39207657 aaaatttcga 39207648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 16939500 - 16939393
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| | | || |||||  | ||||| || |||||||||||||| || ||| ||||||    
T  16939500 ggaaaatttagttgtatttccttatttaatttcaggtttgaaattctttgtcaattaactactgaagtcttcctcggcagttaactgcagccggttcttt 16939401  T
Q  178 aaaatttc 185  Q
    ||||||||    
T  16939400 aaaatttc 16939393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 7121020 - 7120914
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaacc-gattctt 176  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||| || | ||||||| ||| |||||||||||||||| ||||| || || | |||||    
T  7121020 ggaaaatttaggtgtattaccttatttaattttaggtttgaaattcttcagtagttaactgccaaagtttttctcggcagctaactgcagccggtttctt 7120921  T
Q  177 taaaatt 183  Q
    |||||||    
T  7120920 taaaatt 7120914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 41471982 - 41472047
Alignment:
Q  72 aattaaggaaaa-tttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41471982 aattaaggaaaaatttaggtgtatttccttatttaatttaaggtttgaaattcctcggcagttaac 41472047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 35205934 - 35205876
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  35205934 ggaaaatttaggtgtatttccttatttaattttaagtttgaaattcctcggcagttaac 35205876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 20861868 - 20861939
Alignment:
Q  90 tgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaa 161  Q
    |||||||||||||||||||||||| |||||||| || |||||||||| || |||||||| |||| |||||||    
T  20861868 tgtatttccttatttaatttcaggcttgaaatttcttggcagttaactgctgaagttttcctcgacagttaa 20861939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 34892110 - 34892063
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaag 63  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  34892110 atcatatgaatggaatcataaaaataattatgtttaattccttaaaag 34892063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 42731933 - 42731861
Alignment:
Q  90 tgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaac 162  Q
    |||||||| ||||| ||||| ||| |||||||| ||||||||||||| ||||||||||| ||||||| |||||    
T  42731933 tgtatttcattattgaatttaaggcttgaaatttctcggcagttaactgccgaagttttcctcggcaattaac 42731861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 18441438 - 18441483
Alignment:
Q  122 tcctcggcagttaaccgccgaagtttttctcggcagttaactacaa 167  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  18441438 tcctcggcagttaactgccgaggtttttctcggcagttaactacaa 18441483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 3641772 - 3641681
Alignment:
Q  72 aattaaggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||  |  ||||||||||||||||||||||| |||| || ||| |||||||||||   |||| ||||| ||| ||||||||||    
T  3641772 aattaaggaaaaacttagtgtatttccttatttaatttcaagttttaagttcatcggcagttaattcccgaggttttcctcagcagttaact 3641681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 44885797 - 44885751
Alignment:
Q  90 tgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||| |||||||||||||||| |||||||| |||||||||||||    
T  44885797 tgtattttcttatttaatttcaggcttgaaatttctcggcagttaac 44885751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 31745290 - 31745217
Alignment:
Q  90 tgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||| ||||||||||||| | |||||||| ||||||  ||||| ||||||||||| ||| | ||||||||    
T  31745290 tgtatttctttatttaatttcaagcttgaaatttctcggcttttaactgccgaagttttcctcagtagttaact 31745217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 28645449 - 28645401
Alignment:
Q  122 tcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccg 170  Q
    ||||||||||||||| |||||||||||||||| || |||||| ||||||    
T  28645449 tcctcggcagttaacggccgaagtttttctcgacaattaactgcaaccg 28645401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 28650033 - 28649985
Alignment:
Q  122 tcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccg 170  Q
    ||||||||||||||| |||||||||||||||| || |||||| ||||||    
T  28650033 tcctcggcagttaacggccgaagtttttctcgacaattaactgcaaccg 28649985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 134
Target Start/End: Complemental strand, 36595085 - 36595054
Alignment:
Q  103 ttaatttcaggtttgaaattcctcggcagtta 134  Q
    ||||||||||||||||||||||||||||||||    
T  36595085 ttaatttcaggtttgaaattcctcggcagtta 36595054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 17924279 - 17924321
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||| ||||||||||||||||||||    
T  17924279 ttcctcggcagttaactaccgaggtttttctcggcagttaact 17924321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 34892062 - 34892024
Alignment:
Q  146 ttttctcggcagttaactacaaccgattctttaaaattt 184  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  34892062 ttttctcggcagttaactgcaaccggttctttaaaattt 34892024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 43262498 - 43262456
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  43262498 ttcctcggcagttaactaccgaagttttcctcggcagttaact 43262456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 26451556 - 26451507
Alignment:
Q  122 tcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccga 171  Q
    |||||||||||||||  |||| ||||| ||||||||||||||||| ||||    
T  26451556 tcctcggcagttaactaccgaggttttcctcggcagttaactacagccga 26451507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 28646246 - 28646295
Alignment:
Q  124 ctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgatt 173  Q
    ||||| ||||||| ||||||||||| |||||||||||||| || ||||||    
T  28646246 ctcggtagttaactgccgaagttttcctcggcagttaactgcagccgatt 28646295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 28650830 - 28650879
Alignment:
Q  124 ctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgatt 173  Q
    ||||| ||||||| ||||||||||| |||||||||||||| || ||||||    
T  28650830 ctcggtagttaactgccgaagttttcctcggcagttaactgcagccgatt 28650879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 45410298 - 45410253
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaa 61  Q
    ||||||||||||||||||||||||||||| | |||| ||| |||||    
T  45410298 atcatatgaatgaaatcataaaaataattctatttatttcattaaa 45410253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 14102229 - 14102409
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||||||||||    
T  14102229 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 14102328  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| | || |||||||||||||||||||    
T  14102329 atttcatgtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaattgcagccgattctttaaaatttcg 14102409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 14412246 - 14412426
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||||||||||    
T  14412246 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 14412345  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| | || |||||||||||||||||||    
T  14412346 atttcaagtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaattgcagccgattctttaaaatttcg 14412426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 13645223 - 13645402
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||||||||||    
T  13645223 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 13645322  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttc 185  Q
    ||||||| ||| ||||||||||||||||||| ||| ||||||| |||||||||||||| || ||  ||||||||||||||    
T  13645323 atttcagatttaaaattcctcggcagttaactgcctaagttttcctcggcagttaactgcagcctgttctttaaaatttc 13645402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 19072629 - 19072451
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||| || |||||||||||||    
T  19072629 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttatatgcatttccttattta 19072530  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaattt 184  Q
    |||||| |||||||| ||||||||||||||| ||| ||||||| ||||||||||||||  | |||||||||||||||||    
T  19072529 atttcatgtttgaaaatcctcggcagttaactgccaaagttttcctcggcagttaactgtagccgattctttaaaattt 19072451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 48001256 - 48001412
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag----------aattaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| ||||||||| |||||||    
T  48001256 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaagtgtatttctttattta 48001355  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaac 162  Q
    ||||||||||||||||||||||||||||||  || |||||||| |||  ||||||||    
T  48001356 atttcaggtttgaaattcctcggcagttaattgctgaagttttcctccacagttaac 48001412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 11886084 - 11885928
Alignment:
Q  72 aattaaggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccga 171  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||  ||||||||||| |||||||||||||| ||  ||     
T  11886084 aattaaggaaaatttaggtgtattttcttatttaatttcaggtttgaaattcctcgacagttaa-tgccgaagttttcctcggcagttaactgcagtcgg 11885986  T
Q  172 ttctttaaaatttcgacaataaattacaaaaggacatttgaataatttacttgtgttt 229  Q
    |||||||||||||||| ||| |||| |  | |||||||||||||||||||| ||||||    
T  11885985 ttctttaaaatttcgataattaattgccgagggacatttgaataatttactcgtgttt 11885928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 47751066 - 47751213
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaat----------taaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||          ||||||||||||| |||||||||||||||||    
T  47751066 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaatgtttaaagaattaaattgaattaaggaaaatttaggtgtatttccttattta 47751165  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcg 153  Q
    ||||||||||||||||||||| ||||||||| | ||||||||| ||||    
T  47751166 atttcaggtttgaaattcctccgcagttaactgacgaagttttactcg 47751213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 31512920 - 31513050
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||          |||||||||||| |||||||||||||||||    
T  31512920 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaagaattaaataattaaatttaattaaggaaaatttaggtgtatttccttattta 31513019  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    |||||| ||||||||||||||||||||||||    
T  31513020 atttcaagtttgaaattcctcggcagttaac 31513050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 38555366 - 38555474
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||| ||||||||||| |||||||||||||| || | | ||||||    
T  38555366 ggaaaatttaggtgtatttccttatttaattttaggtttgaaatttttcggcagttaactgccgaagttttcctcggcagttaactgcagctggttcttt 38555465  T
Q  178 aaaatttcg 186  Q
    |||||||||    
T  38555466 aaaatttcg 38555474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 13644541 - 13644433
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| | ||| |||||| ||||||||||| ||||||| |||||| || ||| ||||||    
T  13644541 ggaaaatttaggtgtatttccttatttaatttcagatttgaaattctttggcggttaactgccgaagttttcctcggcatttaactgcagccggttcttt 13644442  T
Q  178 aaaatttcg 186  Q
    |||||||||    
T  13644441 aaaatttcg 13644433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 12027639 - 12027578
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12027639 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 12027578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 38555234 - 38555126
Alignment:
Q  38 aataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcg 127  Q
    ||||||||||||||||||||||||||||||||||||||||          | |||||||| ||||||||||||||||||||||||||||||||||| |||    
T  38555234 aataattatgtttaattccttaaaaggattaaagaattaaatttaattaagaaaaatttaggtgtatttccttatttaatttcaggtttgaaattcttcg 38555135  T
Q  128 gcagttaac 136  Q
    |||||||||    
T  38555134 gcagttaac 38555126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 30846704 - 30846832
Alignment:
Q  16 atcatatgaatgaaatcataaaaataat---tatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttat 102  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||          |||||||||| ||||||||||||||    
T  30846704 atcatatgaatgaaatcataaaaataataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttat 30846803  T
Q  103 ttaatttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||||||||||     |||||||||||||||    
T  30846804 ttaatttcaggttt-----tcctcggcagttaac 30846832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 30846045 - 30845987
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30846045 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 30845987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 11886176 - 11886114
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattcctt-aaaaggattaaagaattaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11886176 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaaggattaaagaattaa 11886114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 14101542 - 14101486
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagtta 134  Q
    |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||    
T  14101542 ggaaaatttaggtgtattttcttatttaatttcacgtttgaaattcctcggcagtta 14101486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 14411559 - 14411503
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagtta 134  Q
    |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||    
T  14411559 ggaaaatttaggtgtattttcttatttaatttcacgtttgaaattcctcggcagtta 14411503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 41047853 - 41047802
Alignment:
Q  122 tcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgatt 173  Q
    |||||||||||||||  |||||||||| ||||||||||||||||| ||||||    
T  41047853 tcctcggcagttaactaccgaagttttcctcggcagttaactacacccgatt 41047802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 31323126 - 31323078
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactacaacc 169  Q
    |||||||| ||||||| ||||| ||||||||||| ||||||||||||||    
T  31323126 ttcctcggtagttaactgccgaggtttttctcggaagttaactacaacc 31323078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 37340377 - 37340330
Alignment:
Q  123 cctcggcagttaaccgccgaagtttttctcggcagttaactacaaccg 170  Q
    ||||||||||||||  |||| |||||||||||||||||||| ||||||    
T  37340377 cctcggcagttaactaccgaggtttttctcggcagttaactgcaaccg 37340330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 42795112 - 42795151
Alignment:
Q  124 ctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  42795112 ctcggcagttaactgccgaagttttcctcggcagttaact 42795151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 17834564 - 17834522
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  17834564 ttcctcggcagttaactaccgaagttttcctcggcagttaact 17834522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 29112450 - 29112408
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||    
T  29112450 ttcctcagcagttaactgccgaagttttcctcggcagttaact 29112408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 47061000 - 47060951
Alignment:
Q  124 ctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgatt 173  Q
    |||||||||||||  |||| ||||| ||||||||||||||||| ||||||    
T  47061000 ctcggcagttaactaccgaggttttcctcggcagttaactacagccgatt 47060951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 10659007 - 10658835
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa--ggaaaatttatgtgtatttccttatttaatttcagg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||||||     
T  10659007 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaaaggaaaacttaggtgtatttccttatttaatttcaga 10658908  T
Q  114 tttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||| || || ||| |||||| ||||||||    
T  10658907 tttgaaattcctcggcagttaactgccaaagttttcctcggcagttagctgcagccggttcttttaaatttcg 10658835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 45075538 - 45075358
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||    
T  45075538 atcatatgaattaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaatcaaggaaaatttaggtgtatttccttattta 45075439  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| || |||||||||||||||||||    
T  45075438 atttcaggtttgaaattcctcggcagttaactgccaaagttttcctcggcagttaactccagccgattctttaaaatttcg 45075358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 19842695 - 19842473
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattta 105  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||          |||||||||||||| |||||||||||||    
T  19842695 atcatatgaatgaaatcataaaaataattatgtttaattccttacaaggattaaagaattaaatttaattaaggaaaatttatgtgcatttccttattta 19842596  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaagga 205  Q
    |||||| |||||||||||| ||||||||||| | ||||||||| ||| |||||||||| || ||||||||||||||||||| || | || | |  ||||     
T  19842595 atttcatgtttgaaattcc-cggcagttaactgtcgaagttttcctcagcagttaactgcagccgattctttaaaatttcggcagttaactgccgaaggg 19842497  T
Q  206 catttgaataatttacttgtgttt 229  Q
    ||||||||||||||||||||||||    
T  19842496 catttgaataatttacttgtgttt 19842473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 7941887 - 7942066
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||| ||||||||    
T  7941887 atcatatgaatgaaattataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtattttcttattta 7941986  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    ||||||||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  7941987 atttcaggtttgaaattcctcggcatttaactgccgaaattttgctcggcagttaactacaacc-attctttaaaatttcg 7942066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 11270165 - 11270388
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||||||||||||||    
T  11270165 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 11270264  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaagga 205  Q
    |||| |||||||||||| ||||||||||||| ||||||||||| || ||||||||||| || ||| |||||| |||||||| || | || |    || ||    
T  11270265 attttaggtttgaaatttctcggcagttaactgccgaagttttccttggcagttaactgcagccggttcttttaaatttcggcagttaactgtcgaaaga 11270364  T
Q  206 catttgaataatttacttgtgttt 229  Q
    ||||||||||||||||| ||||||    
T  11270365 catttgaataatttactcgtgttt 11270388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 6143863 - 6143647
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattta 105  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||          | |||||||| ||||| |||||||||||    
T  6143863 atcatctgaatgaaatgataaaaataattatgtttaattccttaaaaggattaaataattaaatttaattaagaaaaatttaggtgtagttccttattta 6143764  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaagga 205  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || ||| |||||| |||||||  |||| || | |  |||||    
T  6143763 atttcaggtttaaaattcctcggcagttaactgccgaagttttcctcggcagttaactgcagccggttcttttaaatttcagcaattaactgccgaagga 6143664  T
Q  206 catttgaataatttact 222  Q
    ||||||| |||||||||    
T  6143663 catttgagtaatttact 6143647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 32592405 - 32592226
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    |||||||||||||||||||||||    |||||||||||| ||||||||||||||||||||          |||||||||||| |||||||||||||||||    
T  32592405 atcatatgaatgaaatcataaaa----ttatgtttaattgcttaaaaggattaaagaattgaatttaattaaggaaaatttaggtgtatttccttattta 32592310  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgaca 189  Q
    |||||||||||||||||||||||||| |||| | ||||||||| |||||||||||||| ||  |  ||||||||||||||||||    
T  32592309 atttcaggtttgaaattcctcggcagctaactgtcgaagttttcctcggcagttaactgcagtcagttctttaaaatttcgaca 32592226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 32743373 - 32743243
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||    
T  32743373 atcatatgaatgaaatcataaaaataattatgtataattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 32743274  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||||||||||||||||||||||||    
T  32743273 atttcaggtttgaaattcctcggcagttaac 32743243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 45076202 - 45076311
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaag-tttttctcggcagttaactacaaccgattctt 176  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| |||||    
T  45076202 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactgccgaagttttttctcggcagttaactacagccggttctt 45076301  T
Q  177 taaaatttcg 186  Q
    ||||||||||    
T  45076302 taaaatttcg 45076311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 7941230 - 7941122
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||| || ||| ||||||    
T  7941230 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactgccgaagttttcctcagcagttaactgcagccggttcttt 7941131  T
Q  178 aaaatttcg 186  Q
    |||||||||    
T  7941130 aaaatttcg 7941122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 26494384 - 26494533
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag----------aattaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| ||||||| ||||||| |    
T  26494384 atcatattaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtattaccttattca 26494483  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggc 155  Q
    |||| || |||||||||||||| |||||||| ||||||||||| ||||||    
T  26494484 attttagatttgaaattcctcgccagttaactgccgaagttttcctcggc 26494533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 4274831 - 4275010
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattta 105  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||          || ||||||| |||||||||||||||||    
T  4274831 atcatatgaatgaaatcataaaaagaattacgtttaattacttaaaaggattaaataattaaatttaattcagggaaatttaggtgtatttccttattta 4274930  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttc 185  Q
    |||||||||||||||||  ||||||||||||  |||||||||| || ||||||||| | |  ||| ||||||||||||||    
T  4274931 atttcaggtttgaaatttttcggcagttaactaccgaagttttccttggcagttaaatgccgccggttctttaaaatttc 4275010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 20484821 - 20484682
Alignment:
Q  19 atatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaa----------ttaaggaaaatttatgtgtatttccttatttaatt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||| ||||||||||||||||||||    
T  20484821 atatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttatttaatt 20484722  T
Q  109 tcaggtttgaaattcctcggcagttaaccgccgaagtttt 148  Q
    || | ||| |||||  |||||||||||| |||||||||||    
T  20484721 tctgatttaaaattaatcggcagttaactgccgaagtttt 20484682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 32593065 - 32593176
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||| |||||||| || ||| ||||||    
T  32593065 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactatcgaagttttcctcggaagttaactgcagccggttcttt 32593164  T
Q  178 aaaatttcgaca 189  Q
    ||||||||||||    
T  32593165 aaaatttcgaca 32593176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 39999460 - 39999591
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag----------aattaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||          |||||||||||||||| |||||||| ||||||||    
T  39999460 atcatatgaatgaaatcataaaaataattatgtataatttcttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtattttcttattta 39999559  T
Q  106 atttcaggtttgaaattcctcggcagttaacc 137  Q
    |||| ||||||||| |||||||||||||||||    
T  39999560 atttaaggtttgaatttcctcggcagttaacc 39999591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 20485484 - 20485569
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  20485484 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcggcagttaattgccgaagttttcctcggcagttaact 20485569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 51755803 - 51755888
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||||||||    
T  51755803 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcttcggcagttaactgccgaagttttcctctgcagttaact 51755888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 90 - 189
Target Start/End: Original strand, 14043863 - 14043962
Alignment:
Q  90 tgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgaca 189  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||||| || |||||| | ||||| |||||||    
T  14043863 tgtatttccttatttaatttcaggcttgaaatttctcggcagttaactgccgaagttttcctcggcagttaactgcagccgattttctaaaacttcgaca 14043962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 4331029 - 4330969
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4331029 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaa-gattaaagaattaa 4330969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 50330706 - 50330648
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  50330706 ggaaaatttatgtgcatttccttatttaatttcatgtttgaaattcctcggcagttaac 50330648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 30294827 - 30294890
Alignment:
Q  80 aaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaa 143  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  30294827 aaaatttaggtgcatttccttatttaatttcaggtttgaaattcatcggcagttaactgccgaa 30294890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 31890188 - 31890265
Alignment:
Q  72 aattaaggaaaat-ttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttt 148  Q
    ||||||||||||  ||| ||||| |||||||||||||||||||||| || ||| |||||||||||| |||||||||||    
T  31890188 aattaaggaaaaacttaggtgtacttccttatttaatttcaggttttaagttcatcggcagttaactgccgaagtttt 31890265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 2062477 - 2062421
Alignment:
Q  107 tttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||| |||||||| ||||||||||||| ||||||||||| |||| |||||||||    
T  2062477 tttcaggcttgaaatttctcggcagttaactgccgaagttttcctcgacagttaact 2062421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 4274180 - 4274122
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||  ||||||||| ||||||||||||| |||||||||||||| | |||||||    
T  4274180 ggaaaatttgggtgtatttctttatttaatttcaagtttgaaattcctcagtagttaac 4274122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 6525264 - 6525346
Alignment:
Q  72 aattaaggaaaa-tttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcg 153  Q
    |||||||||||| ||||  |||||||| |||||||| ||||||||| || ||| ||| |||||||| ||| ||||||||||||    
T  6525264 aattaaggaaaaatttagatgtatttcattatttaagttcaggttttaagttcttcgacagttaactgccaaagtttttctcg 6525346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 50330660 - 50330619
Alignment:
Q  150 ctcggcagttaactacaaccgattctttaaaatttcgacaat 191  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  50330660 ctcggcagttaactgcagccgattctttaaaatttcgacaat 50330619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 10492869 - 10492909
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaa 161  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  10492869 ttcctcggcagttaactgccgaagttttcctcggcagttaa 10492909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 34722351 - 34722287
Alignment:
Q  72 aattaaggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||||||||  |  |||||||||||||||||||||||||||| || ||| ||| ||||||||    
T  34722351 aattaaggaaaaacttagtgtatttccttatttaatttcaggttttaagttcttcgacagttaac 34722287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 8156585 - 8156543
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||    
T  8156585 ttcctcggcagttaactgccgaggttttcctcggcagttaact 8156543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 9582620 - 9582582
Alignment:
Q  125 tcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  9582620 tcggcagttaactgacgaagtttttctcggcagttaact 9582582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 16484452 - 16484494
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  16484452 ttcctcggcagttaactcccgaagttttcctcggcagttaact 16484494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 19341590 - 19341632
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||    
T  19341590 ttcctcggcagttaactgccgaagttttcctcggtagttaact 19341632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 43478826 - 43478868
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  43478826 ttcctcggcagttaactaccgaagttttcctcggcagttaact 43478868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 26493676 - 26493643
Alignment:
Q  76 aaggaaaatttatgtgtatttccttatttaattt 109  Q
    |||||||||||| |||||||||||||||||||||    
T  26493676 aaggaaaatttaggtgtatttccttatttaattt 26493643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 41577151 - 41577094
Alignment:
Q  122 tcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaa 179  Q
    |||||||||||| ||  ||||||||||| ||| ||||||||| ||||||||| |||||    
T  41577151 tcctcggcagtttactaccgaagtttttgtcgacagttaactgcaaccgattttttaa 41577094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 16851200 - 16851148
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgatt 173  Q
    |||||||| |||| ||  |||||||||| ||||||||||||||||| ||||||    
T  16851200 ttcctcggtagtttactaccgaagttttcctcggcagttaactacagccgatt 16851148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 39999578 - 39999614
Alignment:
Q  150 ctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  39999578 ctcggcagttaaccacagccgattctttaaaatttcg 39999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 48566419 - 48566375
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactac 165  Q
    ||||||||||||||||  |||||||||| ||||| ||||||||||    
T  48566419 ttcctcggcagttaactaccgaagttttcctcggtagttaactac 48566375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 33222808 - 33222628
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattta 105  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||          |||||||||| |||||||||||||||||    
T  33222808 atcatatgattgaaatcataaaaataattatgtttaattccttaaaaggattaatgaattaaatttaattaaggaaaatttaggtgtatttccttattta 33222709  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||| |||||||||||||||    
T  33222708 atttcaggtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaactgcagccggttctttaaaatttcg 33222628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 29407768 - 29407984
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||          |||||||||||| |||||||||||||||||    
T  29407768 atcatatgaatgaaatcattaaaataattatgtttaattccttaaaagaattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 29407867  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaagga 205  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||  |||||||| || ||| |||||||||||||||||| | || | |  | |||    
T  29407868 atttcaggtttgaaattcctcggcagttaactgccgaagttttcctcgttagttaactgcagccggttctttaaaatttcgacagttaactgccgaggga 29407967  T
Q  206 catttgaataatttact 222  Q
    ||||||| |||||||||    
T  29407968 catttgagtaatttact 29407984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 28138773 - 28138550
Alignment:
Q  16 atcatatgaatgaaatcataaaaa-taattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattt 104  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||          |||||||||| |||||||| |||||||    
T  28138773 atcatatgaatgaaatcataaaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtattttcttattt 28138674  T
Q  105 aatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaagg 204  Q
    ||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||| ||||||||||||||| || | || |||  | ||    
T  28138673 aattttagatttgaaattcctcggcagttaactgccgaagttttcctcggcagttaattgcaaccggttctttaaaatttcggcagttaactactgaggg 28138574  T
Q  205 acatttgaataatttacttgtgtt 228  Q
     ||||||||||||||||| |||||    
T  28138573 gcatttgaataatttactcgtgtt 28138550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 28419600 - 28419440
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaa-----------ttaaggaaaatttatgtgtatttccttattt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||| ||||||||||||||||    
T  28419600 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaaattaaatttaattaaggaaaatttaggtgtatttccttattt 28419501  T
Q  105 aatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactac 165  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  28419500 aatttcaggtttgaaattcatcggcagttaactgccgaagttttcctcggtagttaactac 28419440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 2271619 - 2271798
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaaga---------attaaggaaaatttatgtgtatttccttatttaa 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||  |         ||||||||||||||||||| ||||||||||||||    
T  2271619 atcatatgaaagaaatcataaaaataattatgtttaattccttaaaatgattaagaattaaatttaattaaggaaaatttatgtgcatttccttatttaa 2271718  T
Q  107 tttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    ||||| |||||||||| ||||||||||||| ||||||||||| |||| ||||||||| || | |||||||||||||||||    
T  2271719 tttcatgtttgaaatttctcggcagttaactgccgaagttttcctcgacagttaactgcagctgattctttaaaatttcg 2271798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 12252373 - 12252586
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag----------aattaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||          |||||||||||||||| |||||||||||||||||    
T  12252373 atcatatgaatgaaatcataaaaataactatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 12252472  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaagga 205  Q
    ||||||||||||||||||||||||||||          ||||| ||||| |||||||| || ||| |||||||||||||||||| | || | |  |||||    
T  12252473 atttcaggtttgaaattcctcggcagtt----------gttttcctcggaagttaactgcagccggttctttaaaatttcgacagttaactgccgaagga 12252562  T
Q  206 catttgaataatttacttgtgttt 229  Q
    ||||||| ||||||| ||||||||    
T  12252563 catttgagtaatttatttgtgttt 12252586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 14002685 - 14002555
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaa----------ttaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||          |||||||||||||| |||||||||||||||||    
T  14002685 atcatatgaatgaaatcataaaaataattatatttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 14002586  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    ||||| |||||||||||||||||||||||||    
T  14002585 atttctggtttgaaattcctcggcagttaac 14002555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 37322018 - 37322148
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||          |||||||||||| |||||||||||||||||    
T  37322018 atcatatgaatgaaatcataaaaattattatgtttatttccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 37322117  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||| |||||||||||||||||||||||    
T  37322118 atttcagatttgaaattcctcggcagttaac 37322148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 28139509 - 28139618
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccga-ttctt 176  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| | || |||| || ||    
T  28139509 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcagcagttaactgccgaagttttcctcggcagttaaatgcagccgatttttt 28139608  T
Q  177 taaaatttcg 186  Q
    ||||||||||    
T  28139609 taaaatttcg 28139618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 23266125 - 23266282
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag--aattaaggaaaatttatgtgtatttccttatttaatttcagg 113  Q
    ||||||| |||||||||||||||||||||||||  ||||     |||| ||||||   |||||||||||||||| |||||||||||||||||||||||||    
T  23266125 atcatataaatgaaatcataaaaataattatgt--aatt-----aaagaattaaatttaattaaggaaaatttaagtgtatttccttatttaatttcagg 23266217  T
Q  114 tttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttc 185  Q
    |||||||||||||||       | ||||||||||| |||||||||||||| || ||| ||||||||||||||    
T  23266218 tttgaaattcctcgg-------ctgccgaagttttcctcggcagttaactgcagccggttctttaaaatttc 23266282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 16544491 - 16544378
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||  ||||  |||||| | |||||| ||||||    
T  16544491 ggaaaatttaggtgtatttccttatttaatttcatgtttgaaattcctcggcagttagctgccgaagtttccctcgagagttaagtgcaaccggttcttt 16544392  T
Q  178 aaaatttcgacaat 191  Q
    ||||||||| ||||    
T  16544391 aaaatttcggcaat 16544378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 29407093 - 29406984
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggttt-gaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctt 176  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||||||| | || ||| |||||    
T  29407093 ggaaaatttaggtgtatttacttatttaatttcaggttttgaaattcttcggcagttaactgccgaagttttcctcggcagttaattgcagccggttctt 29406994  T
Q  177 taaaatttcg 186  Q
    ||||||||||    
T  29406993 taaaatttcg 29406984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 16544564 - 16544721
Alignment:
Q  72 aattaaggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccga 171  Q
    |||||||||||||||| |||||||| ||||||||  ||||| |||||||||||||||||| |||| | ||||||||| ||| |||| ||||| || |||     
T  16544564 aattaaggaaaatttaggtgtattttcttatttatattcagatttgaaattcctcggcagataactgtcgaagttttcctcagcag-taactgcagccgg 16544662  T
Q  172 ttctttaaaatttcgacaataaattacaaaaggacatttgaataatttacttgtgtttt 230  Q
    ||||||||||||| |||| | ||||    | |||||||||| |||||||||||||||||    
T  16544663 ttctttaaaattttgacagttaattgtcgagggacatttgagtaatttacttgtgtttt 16544721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 40156701 - 40156640
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40156701 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 40156640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 6232765 - 6232701
Alignment:
Q  72 aattaaggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6232765 aattaaggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 6232701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 37294449 - 37294379
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttt 148  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  37294449 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcttcggcagttaactgccgaagtttt 37294379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 37294787 - 37294836
Alignment:
Q  28 aaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37294787 aaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 37294836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 1728882 - 1728774
Alignment:
Q  80 aaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttc-------tcggcagttaactacaaccgat 172  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||    ||| ||||||||||| |       ||||||||||||| |||||| |    
T  1728882 aaaatttaggtgtatttccttatttaatttcaggtttgaaattcttcggc----aactgccgaagttttcctcgacaatcggcagttaactgcaaccggt 1728787  T
Q  173 tctttaaaatttc 185  Q
    |||||||||||||    
T  1728786 tctttaaaatttc 1728774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 30271200 - 30271109
Alignment:
Q  72 aattaaggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||  |  |||||||||||||||||||||||||||| || ||| ||| ||||||||  |||||||||| ||| ||||||||||    
T  30271200 aattaaggaaaaacttagtgtatttccttatttaatttcaggttttaagttcttcgacagttaactaccgaagttttcctcagcagttaact 30271109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 30273097 - 30273188
Alignment:
Q  72 aattaaggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||  |  ||||||||||||||||||||| |||||| || |||||||||| |||||  |||| ||||| ||||||||||||||    
T  30273097 aattaaggaaaaacttagtgtatttccttatttaattttaggttttaagttcctcggcaattaactaccgaggttttcctcggcagttaact 30273188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 6232800 - 6232762
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaatt 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6232800 atcatatgaatgaaatcataaaaataattatgtttaatt 6232762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 37893346 - 37893411
Alignment:
Q  72 aattaaggaaaat-ttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||||||||  ||| ||||||||||||||||||||||| |||| || |||||||| |||||||    
T  37893346 aattaaggaaaaacttaggtgtatttccttatttaatttcatgttttaagttcctcggtagttaac 37893411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 40156477 - 40156406
Alignment:
Q  120 attcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaat 191  Q
    ||||||||||||||||| | ||||||||| |||| ||||||||| || ||| || || ||||||||| ||||    
T  40156477 attcctcggcagttaactgtcgaagttttcctcgtcagttaactgcagccggtttttcaaaatttcggcaat 40156406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 3943188 - 3943230
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||| ||||||||||||||||||||    
T  3943188 ttcctcggcagttaactaccgaggtttttctcggcagttaact 3943230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 7189947 - 7189989
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  7189947 ttcctcggcagttaactaccgaagttttcctcggcagttaact 7189989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 41004605 - 41004563
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  ||||||||||| |||||||||||||    
T  41004605 ttcctcggcagttaactaccgaagtttttttcggcagttaact 41004563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 36255709 - 36255758
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccg 170  Q
    ||||| || ||||||||| ||||||||| |||||||||||||| ||||||    
T  36255709 ttccttggtagttaaccgtcgaagttttcctcggcagttaactgcaaccg 36255758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 41500231 - 41500272
Alignment:
Q  122 tcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||||||||  |||| ||||||||||||||||||||    
T  41500231 tcctcggcagttaactaccgaggtttttctcggcagttaact 41500272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 4015102 - 4015154
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgatt 173  Q
    |||||||| |||| || ||||||||||||||||| |||||||| || ||||||    
T  4015102 ttcctcggtagtttactgccgaagtttttctcggtagttaactgcagccgatt 4015154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 5351728 - 5351772
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactac 165  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||||    
T  5351728 ttcctcggcagttaactaccgaggttttcctcggcagttaactac 5351772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 35671274 - 35671091
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||    
T  35671274 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 35671175  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgaca 189  Q
    | |||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||| || ||| ||||||||||||||||||    
T  35671174 agttcatgtttgaaattcctcggcagttaactgccaaagttttcctcggcagttaactgcagccggttctttaaaatttcgaca 35671091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 30192684 - 30192461
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaag----------gaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||  || ||||||||||||||    
T  30192684 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaagaaaattttggtatatttccttattta 30192585  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaagga 205  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| || ||| ||||||||||||||| || | || | |  ||||     
T  30192584 atttcaggtttgaaattcctcggcagttaactgccgaagttttcctcgacagttaactgcagccggttctttaaaatttcggcagttaactgccgaaggg 30192485  T
Q  206 catttgaataatttacttgtgttt 229  Q
    ||||||| ||||||||| ||||||    
T  30192484 catttgagtaatttactcgtgttt 30192461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 42912758 - 42912916
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaa-----------ttaaggaaaatttatgtgtatttccttattt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||| ||||||||||||||||    
T  42912758 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaaattaaattaaattaaggaaaatttaggtgtatttccttattt 42912857  T
Q  105 aatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    | ||||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||||    
T  42912858 agtttcaggtttgaaattcttcggcagttaactgccgaagttttcctcggtagttaact 42912916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 35282275 - 35282460
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag----------aattaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||          |||||||||||||||| |||||||||||||||||    
T  35282275 atcatatgaatgaaatcataaaaatgattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 35282374  T
Q  106 atttcaggtttgaaattcctcggcagtt------aaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttc 185  Q
    ||||||||||||||||| |||| || ||      ||| ||||||||||| |||||||||||||| || |||||||||| |||||||    
T  35282375 atttcaggtttgaaatttctcgacaattaactgcaactgccgaagttttcctcggcagttaactgcagccgattcttttaaatttc 35282460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 41622339 - 41622209
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaa----------ttaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| |||||||| |||||||||||||||||    
T  41622339 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaagaaaaatttaggtgtatttccttattta 41622240  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||||||||||||| |||||||||||||    
T  41622239 atttcaggtttgaaattactcggcagttaac 41622209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 40789160 - 40789304
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||  || |||| |||||||||||||| || ||||||||||    
T  40789160 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcggcagttaactgctaaaattttcctcggcagttaactgcagccgattcttt 40789259  T
Q  178 aaaatttcgacaataaattacaaaaggacatttgaataatttact 222  Q
    ||||||||   ||| || | | || ||||||||||||||||||||    
T  40789260 aaaatttcagtaattaactgccaatggacatttgaataatttact 40789304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 2170451 - 2170512
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 77  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2170451 atcatatgaatgaaatcataaaaataattatgtttaatttcttaaaaggattaaagaattaa 2170512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 20743869 - 20743930
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 77  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20743869 atcatatgaatgaaatcgtaaaaataattatgtttaattccttaaaaggattaaagaattaa 20743930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 20743966 - 20744030
Alignment:
Q  72 aattaaggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  20743966 aattaaggaaaatttatgtgcatttccttatttaatttcatgtttgaaattcctcggcagttaac 20744030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 41623013 - 41623109
Alignment:
Q  90 tgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||| ||||||||| | |||||||||| ||| || ||| |||||||||||||||    
T  41623013 tgtattttcttatttaatttcaggtttgaaattcttcgacagttaactgccgaagttgtcctcggcagtttactgcagccggttctttaaaatttcg 41623109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 2169807 - 2169724
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaa 161  Q
    |||||||||| |||||||| |||||||||||| ||||||||||||| |||| ||||||| ||||||||||| |||| |||||||    
T  2169807 ggaaaatttaggtgtattttcttatttaattttaggtttgaaattcttcggtagttaactgccgaagttttcctcgacagttaa 2169724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 30966590 - 30966672
Alignment:
Q  72 aattaaggaaaat-ttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcg 153  Q
    ||||||||||||  ||| |||||||| |||||||||||| |||||| || |||||||||||||||| ||||||||||| ||||    
T  30966590 aattaaggaaaaacttaggtgtattttcttatttaatttaaggttttaagttcctcggcagttaactgccgaagttttcctcg 30966672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 35671984 - 35672042
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  35671984 ggaaaatttaggtgtatttccttatttaatttcagctttgaaattactcggcacttaac 35672042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 13590537 - 13590578
Alignment:
Q  36 aaaataattatgtttaattccttaaaaggattaaagaattaa 77  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  13590537 aaaaaaattatgtttaattccttaaaaggattaaagaattaa 13590578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 13580724 - 13580688
Alignment:
Q  41 aattatgtttaattccttaaaaggattaaagaattaa 77  Q
    |||||||||||||||||||||||||||||||||||||    
T  13580724 aattatgtttaattccttaaaaggattaaagaattaa 13580688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 30966216 - 30966122
Alignment:
Q  72 aattaaggaaaat-ttatgtgtatttccttatttaatttcaggtttgaaattcctcg--gcagttaaccgccgaagtttttctcggcagttaactaca 166  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||| || |||||||  ||||||||   | |||||||| ||||| |||||||||||    
T  30966216 aattaaggaaaaacttaggtgtatttccttatttaatttcaggttttaagttcctcggcgcagttaa---ctgaagttttcctcgggagttaactaca 30966122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 18307330 - 18307273
Alignment:
Q  122 tcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaa 179  Q
    |||||||||||||||  |||| ||||| ||||||||||||||||| |||||| |||||    
T  18307330 tcctcggcagttaactaccgaggttttcctcggcagttaactacagccgattttttaa 18307273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 42098389 - 42098338
Alignment:
Q  112 ggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||| || |||||||| ||||||||||||| ||||| ||||||||||||||    
T  42098389 ggttttaatttcctcggtagttaaccgccgaggttttcctcggcagttaact 42098338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 25877698 - 25877658
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaa 161  Q
    ||||||||||||||||  |||||||||| ||||||||||||    
T  25877698 ttcctcggcagttaactaccgaagttttcctcggcagttaa 25877658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 15546273 - 15546426
Alignment:
Q  19 atatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttatttaatt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| ||||||||||||||||||||    
T  15546273 atatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttatttaatt 15546372  T
Q  109 tcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaac 162  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  15546373 tcaggtttgaaattcctcggcagttaactgccgaagttttcctcggcagttaac 15546426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 35096830 - 35096671
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||| |||||||| ||||||||    
T  35096830 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtattttcttattta 35096731  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactac 165  Q
    |||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  35096730 attttaggtttgaaattcttcggcagttaactgccgaagttttcctcggcagttaactac 35096671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 11159312 - 11159442
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag----------aattaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| |||||||||||||||||    
T  11159312 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 11159411  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||||||| |||||||| ||||||||||    
T  11159412 atttcaggtttaaaattccttggcagttaac 11159442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 117776 - 117906
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag----------aattaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| |||||| ||||||||||    
T  117776 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatctccttattta 117875  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||| |||||||||||| ||||||||||    
T  117876 atttcagttttgaaattccttggcagttaac 117906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 17338658 - 17338823
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag--aattaaggaaaatttatgtgtatttccttatttaatttcagg 113  Q
    ||||||||||||||||||||||||||||||||||||||||     ||| ||||||   |||||||||||||||| |||||||| |||||||||||||||     
T  17338658 atcatatgaatgaaatcataaaaataattatgtttaattc-----aagaattaaatttaattaaggaaaatttaggtgtattttcttatttaatttcaga 17338752  T
Q  114 tttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaattt 184  Q
    ||| ||||| ||||||||||||  ||||||||||| |||||||||||||| || || ||| || |||||||    
T  17338753 tttaaaatttctcggcagttaattgccgaagttttcctcggcagttaactgcagccaatttttcaaaattt 17338823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 11157856 - 11157769
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactac 165  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||| |||||||||||    
T  11157856 ggaaaatttaggtgcatttccttatttaatttcaggtttgaaattcctcggcagttaactatcgaagttttcctcgacagttaactac 11157769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 15888765 - 15888838
Alignment:
Q  90 tgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||||||||||||||||| || ||||| ||||||||| |||  ||| |||||| ||||||||||||||    
T  15888765 tgtatttccttatttaatttcaggcttcaaatttctcggcagtaaactaccgcagttttcctcggcagttaact 15888838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 32396523 - 32396565
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattcctt 58  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  32396523 atcatatgaatgaaatcataaaaataataatgtttaattcctt 32396565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 26350422 - 26350377
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaa 61  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  26350422 atcatatgaatgaaatcataaaaataattatgtttatttcattaaa 26350377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 11157787 - 11157721
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcga 187  Q
    ||||||| ||||||||  | |||||||| ||| |||||||||| || ||||||||||||||||||||    
T  11157787 ttcctcgacagttaactactgaagttttcctcagcagttaactgcagccgattctttaaaatttcga 11157721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 35177666 - 35177616
Alignment:
Q  135 accgccgaagtttttctcggcagttaactacaaccgattctttaaaatttc 185  Q
    |||| |||||||||||||| ||||||||| || ||||||||||||||||||    
T  35177666 accgacgaagtttttctcgacagttaactgcagccgattctttaaaatttc 35177616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 8192410 - 8192370
Alignment:
Q  130 agttaaccgccgaagtttttctcggcagttaactacaaccg 170  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  8192410 agttaactgccgaagttttcctcggcagttaactacaaccg 8192370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 9049070 - 9049122
Alignment:
Q  111 aggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||| ||||||||||||||||  |||||||||| ||||| ||||||||    
T  9049070 aggtttgaagttcctcggcagttaactaccgaagttttcctcggtagttaact 9049122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 8193205 - 8193247
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||||||||| | ||||||||| ||||||||||||||    
T  8193205 ttcctcggcagttaactgtcgaagttttcctcggcagttaact 8193247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 17597520 - 17597562
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  17597520 ttcctcggcagttaactcccgaagttttcctcggcagttaact 17597562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 29097828 - 29097892
Alignment:
Q  125 tcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgaca 189  Q
    ||||||||||||  |||||||||||||| |||||||||| || |||  | | |||||||||||||    
T  29097828 tcggcagttaactaccgaagtttttctcagcagttaactgcagccggatttctaaaatttcgaca 29097892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 18884385 - 18884565
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||          |||||||||||| |||||||||||||||||    
T  18884385 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaagattaaataattaaatttaattaaggaaaatttaggtgtatttccttattta 18884484  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| || || |||||||||    
T  18884485 attttaggtttgaaattcctcggcagttaactgccgaagtttttctcggcagttaactgcagccggtttttcaaaatttcg 18884565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 2449493 - 2449712
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||          |||||||||||| |||||||||||||||||    
T  2449493 atcatatgaatgaaatcataaaaataattatgtttaatttcttaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 2449592  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaagga 205  Q
    ||||||||||||||||| |||    |||||| | ||||||||||||| ||| |||||| || |||||||||||||||||||||||| || | |  | |||    
T  2449593 atttcaggtttgaaatttctc----gttaactgtcgaagtttttctcagcacttaactgcagccgattctttaaaatttcgacaattaactgccgaggga 2449688  T
Q  206 catttgaataatttacttgtgttt 229  Q
    ||||||| ||||||||| ||||||    
T  2449689 catttgagtaatttactcgtgttt 2449712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 48807266 - 48807490
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaa-ggattaaagaatt----------aaggaaaatttatgtgtatttccttattt 104  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||          |||||||||||| ||||||||||||||||    
T  48807266 atcatatgaatgaaatcataaaaataattatgtttaatttcttaaaaaggattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattt 48807365  T
Q  105 aatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaagg 204  Q
    ||||| ||||||||||||| || ||||||||| ||||||||||| ||| |||||||||| || ||| |||||||||||||||||| | || | |  | ||    
T  48807366 aatttaaggtttgaaattcatcagcagttaactgccgaagttttcctcagcagttaactgcagccggttctttaaaatttcgacagttaactgccgaggg 48807465  T
Q  205 acatttgaataatttacttgtgttt 229  Q
    |||||||| ||||||||| ||||||    
T  48807466 acatttgagtaatttactcgtgttt 48807490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 229
Target Start/End: Complemental strand, 11566046 - 11565835
Alignment:
Q  28 aaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttatttaatttcaggtttg 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||          |||||||||| | |||||| |||||||||||||||||||     
T  11566046 aaatcataaaaataattttgtttaattccttaaaaggattaaagaattaaatttaattaaggaaaatttaggcgtattttcttatttaatttcaggttta 11565947  T
Q  118 aaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaaggacatttgaataat 217  Q
    |||||||||| |||||||| | ||||||||| |||| ||||||||| || ||| ||||||| ||||||| |||| ||   | ||| ||||||||||||||    
T  11565946 aaattcctcgacagttaactgtcgaagttttcctcgacagttaactgcagccggttctttagaatttcggcaattaaccgccaaaagacatttgaataat 11565847  T
Q  218 ttacttgtgttt 229  Q
    ||||| ||||||    
T  11565846 ttactcgtgttt 11565835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 37296092 - 37296222
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag----------aattaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||          |||||||||||||||| |||||||||||||||||    
T  37296092 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaagattaaagaattaaatttaattaaggaaaatttaggtgtatttccttattta 37296191  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||||||||||||||||||||| |||||    
T  37296192 atttcaggtttgaaattcctcggcaattaac 37296222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 37856022 - 37855895
Alignment:
Q  19 atatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa----------ggaaaatttatgtgtatttccttatttaatt 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||          ||||| |||| ||||||||||||||||||||    
T  37856022 atatgaataaaatcataaaaataattatgtttaattccttaaaatgattaaagaattaaatttaattaaggaaagtttaggtgtatttccttatttaatt 37855923  T
Q  109 tcaggtttgaaattcctcggcagttaac 136  Q
    ||||||||||||||||||||||||||||    
T  37855922 tcaggtttgaaattcctcggcagttaac 37855895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 43176581 - 43176689
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattcttt 177  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| || | | ||||||    
T  43176581 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcggtagttaactgccgaagttttcctcggcagttaactgcagcaggttcttt 43176680  T
Q  178 aaaatttcg 186  Q
    |||||||||    
T  43176681 aaaatttcg 43176689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 43175899 - 43175769
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaa----------ttaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||          |||||||||||||| |||||||| ||||||||    
T  43175899 atcatatgaatgaaatcataataataattatgtttaattccttaaaatgattaaagaattaaatttaattaaggaaaatttaggtgtattttcttattta 43175800  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||||||||||||| |||||||||||||    
T  43175799 atttcaggtttgaaattactcggcagttaac 43175769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 48806612 - 48806494
Alignment:
Q  72 aattaaggaaaa-tttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccg 170  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||||||||| || |||    
T  48806612 aattaaggaaaaatttaggtgtattttcttatttaatttcaggtttgaaattcctcggcagttaactgctgaaattttcctcggcagttaactgcagccg 48806513  T
Q  171 attctttaaaatttcgaca 189  Q
     ||||||||||||||||||    
T  48806512 gttctttaaaatttcgaca 48806494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 2449070 - 2449012
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2449070 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 2449012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 37856701 - 37856805
Alignment:
Q  82 aatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaa 181  Q
    |||||| |||||||||||||||||||||||||||||||||| || |||| |||||  | |||||||| |||||||  ||||| || ||| ||||||||||    
T  37856701 aatttaggtgtatttccttatttaatttcaggtttgaaatttcttggcaattaactactgaagttttcctcggcacctaactgcagccggttctttaaaa 37856800  T
Q  182 tttcg 186  Q
    |||||    
T  37856801 tttcg 37856805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 27872523 - 27872443
Alignment:
Q  31 tcataaaaataattatgtttaattccttaaaaggattaaag--aattaaggaaaatttatgtgtatttccttatttaatttca 111  Q
    |||||||||||||||| |||||||||||||||  ||||||   |||||||||||||||| ||||||||| |||||||||||||    
T  27872523 tcataaaaataattatatttaattccttaaaa--attaaatttaattaaggaaaatttaggtgtatttctttatttaatttca 27872443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 6092708 - 6092778
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttt 148  Q
    ||||||||||  |||||||||||||||||||||| |||| |||||| ||| |||||||| |||||||||||    
T  6092708 ggaaaatttagatgtatttccttatttaatttcaagtttaaaattcttcgacagttaactgccgaagtttt 6092778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 28235164 - 28235209
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaa 61  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  28235164 atcatatgaatgaaatcataaaaataattatgtttatttcattaaa 28235209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 16473161 - 16473195
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgttt 50  Q
    |||||||||||||||||||||||||||||||||||    
T  16473161 atcatatgaatgaaatcataaaaataattatgttt 16473195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 20209306 - 20209365
Alignment:
Q  104 taatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||| ||||||| || |||||||||||||  |||||||||| ||| ||||||||||    
T  20209306 taatttcatgtttgaagtttctcggcagttaactaccgaagttttactcagcagttaact 20209365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 4783719 - 4783681
Alignment:
Q  125 tcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  4783719 tcggcagttaactgccgaagttttcctcggcagttaact 4783681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 34503786 - 34503744
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||||||||||||||| ||||||||    
T  34503786 ttcctcggcagttaactaccgaagtttttctcggtagttaact 34503744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 17342216 - 17342167
Alignment:
Q  124 ctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgatt 173  Q
    |||||||||||||  |||||||||||||||| |||||||| || ||||||    
T  17342216 ctcggcagttaactaccgaagtttttctcggtagttaactgcagccgatt 17342167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 20208606 - 20208545
Alignment:
Q  102 tttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||| ||||||| ||| || |||||||||  |||| ||||| ||||||||||||||    
T  20208606 tttaatttcatgtttgaagttcatctgcagttaactaccgaggttttcctcggcagttaact 20208545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 28234520 - 28234475
Alignment:
Q  120 attcctcggcagttaaccgccgaagtttttctcggcagttaactac 165  Q
    ||||||||| |||| || || |||||||||||||||||||||||||    
T  28234520 attcctcggtagtttactgcagaagtttttctcggcagttaactac 28234475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 955865 - 955817
Alignment:
Q  125 tcggcagttaaccgccgaagtttttctcggcagttaactacaaccgatt 173  Q
    ||||||||||||  |||| |||||||||||||||||||| || ||||||    
T  955865 tcggcagttaactaccgaggtttttctcggcagttaactgcagccgatt 955817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 958591 - 958639
Alignment:
Q  122 tcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccg 170  Q
    |||||||||||||||  |||| ||||| |||||||||||||| ||||||    
T  958591 tcctcggcagttaactaccgaggttttcctcggcagttaactgcaaccg 958639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 26932661 - 26932617
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactac 165  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||||    
T  26932661 ttcctcggcagttaactaccgaggttttcctcggcagttaactac 26932617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 53536844 - 53536884
Alignment:
Q  90 tgtatttccttatttaatttcaggtttgaaattcctcggca 130  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  53536844 tgtatttccttatttaatttcaggcttaaaatttctcggca 53536884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 54754 - 54534
Alignment:
Q  19 atatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaag----------gaaaatttatgtgtatttccttatttaatt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||           ||||||||| ||||||||||||||||||||    
T  54754 atatgaatgaaatcataaaaataattatgtttaattccttaaaatgattaaagaattaaatttaattaaagaaaatttaggtgtatttccttatttaatt 54655  T
Q  109 tcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaaggacat 208  Q
    |||  ||| ||||||||||||||||||| | ||| ||||| |||||||||||||| || ||| ||||| ||||||| |||| | |||| |  | ||||||    
T  54654 tcatatttaaaattcctcggcagttaactgtcgatgttttcctcggcagttaactgcagccggttcttcaaaattttgacagttaattgccgagggacat 54555  T
Q  209 ttgaataatttacttgtgttt 229  Q
    |||| ||||||||||||||||    
T  54554 ttgagtaatttacttgtgttt 54534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 18609780 - 18609933
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattcctta----aaaggattaaag--aattaaggaaaatttatgtgtatttccttatttaattt 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    |||| ||||||   ||||||| |||||||| |||||||||||||||||||||    
T  18609780 atcatatgaatgaaatcataaaaataattatgtgtaattccttagattaaagaattaaatttaattaagaaaaatttaggtgtatttccttatttaattt 18609879  T
Q  110 caggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  18609880 caggtttgaaattcctcggcagttaactgccgaagttttcctcggtagttaact 18609933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 5329888 - 5330076
Alignment:
Q  10 aagaatatcatatgaatgaaatcataaaaataattatgtttaattccttaaaa-ggattaaagaattaagg----------aaaatttatgtgtatttcc 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||            |||||||| ||||||||||    
T  5329888 aagaaaatcatatgaatgaaatcataaaaataattatgtttaattcattaaaaaggattaaagaattaaatttaattaaaaaaaatttaggtgtatttcc 5329987  T
Q  99 ttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcga 187  Q
    ||||||||||| ||||||||||||| ||| |||||||| | ||||||||| ||||||| |||||| || ||  ||||||||||||||||    
T  5329988 ttatttaattttaggtttgaaattcatcgacagttaactgtcgaagttttcctcggcaattaactgcagccagttctttaaaatttcga 5330076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 12628016 - 12628158
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaatt----------aaggaaaatttatgtgtatttccttattta 105  Q
    ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||          ||||||| |||| |||||||||||||||||    
T  12628016 atcatataaatgaaatcataaaaataattatgtttaattctttaacaggattaaagaattaaatttaattaaggaaattttaggtgtatttccttattta 12628115  T
Q  106 atttcaggtttgaaattcctcggcagttaaccgccgaagtttt 148  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  12628116 atttcaggtttgaaattcctcgacagttaactgccgaagtttt 12628158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 13760991 - 13761102
Alignment:
Q  72 aattaaggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccga 171  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| | ||||||||| |||||||||||||| || |||     
T  13760991 aattaaggaaaatttaggtgtatttccttatttaatttaaggtttgaaattcgtcggcagttaactgtcgaagttttcctcggcagttaactgcagccgg 13761090  T
Q  172 ttctttaaaatt 183  Q
    ||||||||||||    
T  13761091 ttctttaaaatt 13761102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 21700068 - 21699939
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa-----------ggaaaatttatgtgtatttccttattt 104  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||           |||||||||| |||||||| |||||||    
T  21700068 atcatatgaatgaaatcataaaaataattatgtttaatttcttaagaggattaaagaattaaattttaattaaggaaaatttaggtgtattttcttattt 21699969  T
Q  105 aatttcaggtttgaaattcctcggcagtta 134  Q
    ||||||||||||||||||||||||||||||    
T  21699968 aatttcaggtttgaaattcctcggcagtta 21699939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 42290462 - 42290332
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag----------aattaaggaaaatttatgtgtatttccttattta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||  || |||||||||||||||||    
T  42290462 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagatttaaatttaattaaggaaaacataggtgtatttccttattta 42290363  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||||||||||||| |||| ||||||||    
T  42290362 atttcaggtttgaaatttctcgacagttaac 42290332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 21268717 - 21268799
Alignment:
Q  76 aaggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagt 158  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  21268717 aaggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcagcagttaactgccgaagttttcctcggcagt 21268799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 7943134 - 7943010
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaag----------aattaaggaaaatttatgtgtatttccttattta 105  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||          |||||||||||||||| |||||||||||||||||    
T  7943134 atcatatgaatgaaatcataaaaataattatgtttaattctttaaaaggattacagaattaaatttaattaaggaaaatttaggtgtatttccttattta 7943035  T
Q  106 atttcaggtttgaaattcctcggcagttaac 136  Q
    ||      |||||||||||||||||||||||    
T  7943034 at------tttgaaattcctcggcagttaac 7943010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 41909680 - 41909769
Alignment:
Q  100 tatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgaca 189  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||| |||| |||| ||||||||| || ||||||||||||||||||||||    
T  41909680 tatttaagttcagatttgaaattcctcggcagttaactgccgaaattttcctcgccagttaactgcagccgattctttaaaatttcgaca 41909769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 51461248 - 51461187
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 77  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51461248 atcatatgaatgaaatcataaaaataattatgtttaattctttaaaaggattaaagaattaa 51461187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 12627333 - 12627275
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12627333 ggaaaatttaggtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 12627275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 41909062 - 41908978
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaac 162  Q
    |||||||||| |||||||||||||||||||||||||||| |||||| ||  |||||||| ||||||||||| |||| ||||||||    
T  41909062 ggaaaatttaggtgtatttccttatttaatttcaggtttaaaattcttcaacagttaactgccgaagttttcctcgacagttaac 41908978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 5329217 - 5329159
Alignment:
Q  78 ggaaaatttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||    
T  5329217 ggaaaatttaggtgtatttccttatttaatttcagattcgaaattcctcggcagttaac 5329159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 15695902 - 15695826
Alignment:
Q  90 tgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactaca 166  Q
    |||||||||||||||||||||||  | |||||| ||||||||||||| ||||||||||| |||| ||||||| ||||    
T  15695902 tgtatttccttatttaatttcagactcgaaatttctcggcagttaactgccgaagttttcctcgacagttaattaca 15695826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 13760894 - 13760812
Alignment:
Q  72 aattaaggaaaa-tttatgtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcg 153  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||  |||||||||| ||||||| ||| ||||||| ||||    
T  13760894 aattaaggaaaaatttatgtgtattttcttatttaattttaggtttttaattcctcggtagttaactgccaaagttttcctcg 13760812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 48455576 - 48455531
Alignment:
Q  90 tgtatttccttatttaatttcaggtttgaaattcctcggcagttaa 135  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||    
T  48455576 tgtatttccttatttaatttcaggtttgaaatttctcgacagttaa 48455531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 29425332 - 29425400
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgaca 189  Q
    ||||||||||||||||  |||||||||| ||||| |||||||| ||||||||| ||| ||| |||||||    
T  29425332 ttcctcggcagttaactaccgaagttttcctcggtagttaactgcaaccgattttttcaaacttcgaca 29425400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 11828200 - 11828241
Alignment:
Q  125 tcggcagttaaccgccgaagtttttctcggcagttaactaca 166  Q
    |||||||||||| ||||||||||||||||| |||||||||||    
T  11828200 tcggcagttaactgccgaagtttttctcggtagttaactaca 11828241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 45780306 - 45780267
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagtta 160  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  45780306 ttcctcggcagttaactgccgaagtttttctcggtagtta 45780267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 9710655 - 9710613
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  9710655 ttcctcggcagttaactcccgaagttttcctcggcagttaact 9710613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 20353931 - 20353973
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  20353931 ttcctcggcagttaactaccgaagttttcctcggcagttaact 20353973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 26606875 - 26606833
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||    
T  26606875 ttcctcggcagttaactgccgaagttttcctcggtagttaact 26606833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 44598902 - 44598944
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    ||||||||||||||||  |||||||||| ||||||||||||||    
T  44598902 ttcctcggcagttaactcccgaagttttcctcggcagttaact 44598944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 46217314 - 46217384
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaat 191  Q
    ||||||||||||||||  |||||||||| ||||| |||||||| || |||||| ||| ||| |||| ||||    
T  46217314 ttcctcggcagttaactaccgaagttttcctcggtagttaactgcagccgattttttcaaacttcggcaat 46217384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 47652771 - 47652729
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||    
T  47652771 ttcctcgggagttaactgccgaagttttcctcggcagttaact 47652729  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 45943722 - 45943767
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactaca 166  Q
    ||||||||||||||||  |||||||||| ||||| |||||||||||    
T  45943722 ttcctcggcagttaactaccgaagttttcctcggtagttaactaca 45943767  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 5329171 - 5329135
Alignment:
Q  150 ctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    |||||||||||||| |||||| |||||||||||||||    
T  5329171 ctcggcagttaactgcaaccggttctttaaaatttcg 5329135  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 5750384 - 5750344
Alignment:
Q  125 tcggcagttaaccgccgaagtttttctcggcagttaactac 165  Q
    |||||| ||||||||||| ||||||||||| ||||||||||    
T  5750384 tcggcaattaaccgccgaggtttttctcggtagttaactac 5750344  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 31783711 - 31783755
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactac 165  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||||    
T  31783711 ttcctcggcagttaactcccgaggttttcctcggcagttaactac 31783755  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 49661751 - 49661835
Alignment:
Q  143 agtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaaggacatttgaataatttacttgtgt 227  Q
    |||||| |||||||||||||| || |||  | | ||||| ||||||||| ||||||  | | |||||||||||||||||| ||||    
T  49661751 agttttcctcggcagttaactgcagccgtatttctaaaacttcgacaattaattaccgaggaacatttgaataatttactcgtgt 49661835  T

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Target: scaffold0019 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 127684 - 127470
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaaga---attaaggaaaatttatgtgtatttccttatttaatttcag 112  Q
    ||||||||||||||||||||||||||||||||||||||   ||||  ||| | || |   ||||||||||| ||||||  |||||||||||||||||||     
T  127684 atcatatgaatgaaatcataaaaataattatgtttaatggattaa--ggaattaatatttattaaggaaaaattatgttcatttccttatttaatttcat 127587  T
Q  113 gtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcgacaataaattacaaaaggacatttga 212  Q
     || |||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| || | || |||  | ||| ||||||    
T  127586 tttggaaattactcggcagttaactgccgaagttttcctctgcagttaactacaaccgattctttaaaatttcggcagttaactaccgatggatatttga 127487  T
Q  213 ataatttacttgtgttt 229  Q
     ||||||||| ||||||    
T  127486 gtaatttactcgtgttt 127470  T

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Target: scaffold0217 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 8893 - 8832
Alignment:
Q  16 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8893 atcatatgaatgaaatcataaaaataattatgtttaattccttaaaaggattaaagaattaa 8832  T

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Target: scaffold0065 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 65404 - 65330
Alignment:
Q  112 ggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccgattctttaaaatttcg 186  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||||||||| || |||||||||| ||||||||    
T  65404 ggtttgaaattcctcggcagttaactgccgaagttttcctcgacagttaactgcagccgattcttttaaatttcg 65330  T

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Target: scaffold1379 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 398 - 472
Alignment:
Q  89 gtgtatttccttatttaatttcaggtttgaaattcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||||||||||||||||||||||| || |||||||| |||||||  |||| ||||| |||| |||||||||    
T  398 gtgtatttccttatttaatttcaggttttaagttcctcggtagttaactcccgaggttttcctcgacagttaact 472  T

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Target: scaffold0283 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 1604 - 1650
Alignment:
Q  90 tgtatttccttatttaatttcaggtttgaaattcctcggcagttaac 136  Q
    ||||||| |||||||||||||||| |||||||| |||||||||||||    
T  1604 tgtattttcttatttaatttcaggcttgaaatttctcggcagttaac 1650  T

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Target: scaffold0494 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 908 - 858
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactacaaccga 171  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||||| ||||    
T  908 ttcctcggcagttaactaccgaggttttcctcggcagttaactacagccga 858  T

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Target: scaffold0494; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 934 - 890
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaactac 165  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||||    
T  934 ttcctcggcagttaactaccgaggttttcctcggcagttaactac 890  T

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Target: scaffold0388 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 13905 - 13947
Alignment:
Q  121 ttcctcggcagttaaccgccgaagtttttctcggcagttaact 163  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  13905 ttcctcggtagttaactgccgatgtttttctcggcagttaact 13947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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