View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13090_high_9 (Length: 418)
Name: NF13090_high_9
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 161 - 406
Target Start/End: Complemental strand, 35637875 - 35637630
Alignment:
| Q |
161 |
cattatgccttgaactcgagttttgatatctgcatttgattttatgcttggcgtattcaaatttgtaataaatgaattattttgcacaaattttggttga |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35637875 |
cattatgccttgaactcgagttttgatatctgcatttgattttatgcttggcgtattcaaatttgtaataaatgaattattttgcataaattttggttga |
35637776 |
T |
|
| Q |
261 |
tatccaataaactaaaaagttaatatattcaatctcattaactattaataagctggacattcataaaacctcaggcttaatttgattaaaattgagacct |
360 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35637775 |
tatacaataaactaaaaagttaatatattcaatctcattaactattaataagctggacattcataaaacctcaggcttaatttgattaaaattgagacct |
35637676 |
T |
|
| Q |
361 |
tagaagttagaattccctttgtttcatattttcattttcattattt |
406 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35637675 |
tataagttagaattccctttgtttcatattttcattttcattattt |
35637630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 35637992 - 35637872
Alignment:
| Q |
17 |
gtttagtcagtaaacaaattgttgctagcttgcttttgactaaaaaatgttgctccctcgtttgacttattaattgtatatttgtatttgactaatttct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35637992 |
gtttagtcagtaaacaaattgttgctagcttgcttttgactaaaaaatgttgctccctcgtttgacttattaattgtatatttgtatttgactaatttct |
35637893 |
T |
|
| Q |
117 |
tatgaatcatttttaagacatt |
138 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
35637892 |
tatgaatca-ttttaagacatt |
35637872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University