View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_low_10 (Length: 434)
Name: NF13090_low_10
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 3084615 - 3084211
Alignment:
| Q |
12 |
atgaaggaaataacagagtttgtgtactcttttttgacctgcaagaaatcaaatatcgagcattagaaaacaccgagaatgtcacaacagttaaatatac |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
3084615 |
atgaaggaaataacagagtttgtgtactcttttttgacctgcaagaaatcaaatatcgagcgtcagaaaacaccgagaatgtcacaacagttaaatatac |
3084516 |
T |
|
| Q |
112 |
cttttagatctggttcaatacttctacgaatttcatgtcaggttcaccatgaagtccttcatgcgtgttacgatataatgtgattctctcattattgtat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3084515 |
cttttagatctggttcaatacttctacgaatttcatgtcaggttcaccatgaagtccttcatacgtgttacgatataatgtgattctctcattattgtat |
3084416 |
T |
|
| Q |
212 |
tttatattgtaattatgttaggattaagttgtccatatgtgtagttaatttctttatttctttgtcttaagaaactaggttaggacttcttcgtccacaa |
311 |
Q |
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| T |
3084415 |
tttatattgtaattatgttaggattaagtggtccatatgtgtagttaatttctttatttctttgtcttaagaaactaggttaggacttcttcgtccccaa |
3084316 |
T |
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| Q |
312 |
gataattatgcctttgcagttacatataaaaccctcaagttcagcagtctttaccgtaagcctgaacattctttctctgattgtcccactataaattgtc |
411 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084315 |
gataattatgcctttgcagttacatataaaacc--caagttcagcagtctttaccttaagcctgaacattctttctctgattgtcccactataaattgtc |
3084218 |
T |
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| Q |
412 |
ataactg |
418 |
Q |
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||||||| |
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| T |
3084217 |
ataactg |
3084211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 2511435 - 2511496
Alignment:
| Q |
177 |
tgttacgatataatgtgattctctcattattgtattttatattgtaattatgttaggattaa |
238 |
Q |
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| T |
2511435 |
tgttatgatatgttgtgattctctcattattgtattttatattgtaattatgttaggattaa |
2511496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 2510292 - 2510341
Alignment:
| Q |
177 |
tgttacgatataatgtgattctctcattattgtattttatattgtaatta |
226 |
Q |
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| T |
2510292 |
tgttacgatatgttgtgattctctcattattgtattttatattgtaatta |
2510341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 14824530 - 14824590
Alignment:
| Q |
275 |
gtcttaagaaactaggttaggacttcttcgtccacaagataattatgcctttgcagttaca |
335 |
Q |
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|||| |||||||||| || ||||||||||| | |||||||||| |||||||||||||||| |
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| T |
14824530 |
gtctgaagaaactagattgggacttcttcgccaacaagataatcttgcctttgcagttaca |
14824590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 27684379 - 27684464
Alignment:
| Q |
190 |
tgtgattctctcattattgtattttatattgtaattatgttaggattaagttgtccatatgtgtagttaatttctttatttctttgt |
276 |
Q |
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| T |
27684379 |
tgtgattctctcatg-ttgtattttatattataatcatgttaggattaactatcctttatgtgtaattattttatttatttctttgt |
27684464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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