View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13090_low_11 (Length: 422)
Name: NF13090_low_11
Description: NF13090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13090_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 10557433 - 10557039
Alignment:
| Q |
16 |
aaacacttgcatatgactgtaaatgttatagtactaatactaaccataaagactttagctccagagttaagagcattgatgatcatctttctctcaacag |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10557433 |
aaacacttgcataggactgtaaatgttatagtactaatgctaaccataaagactttagctccagagttaagagcattgatgatcatctttctctcaacag |
10557334 |
T |
|
| Q |
116 |
ggccagtaatctcaactttcctatcagaaacagctggtggaacaggtgcacagatccaatctccttctcttatgtatctagttgctggatcaaaacctgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10557333 |
ggccagtaatctcaactttcctatcagaaacagctggtggaacaggtgcacagatccaatctccttctcttatgtatctagttgctggatcaaaacctgg |
10557234 |
T |
|
| Q |
216 |
tagagctccttcattgtaccttctctttgcttcttttctacactctagtgcatactttatatggtttctgaactcacgttgcaaatcagcaacaaatttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10557233 |
tagagctccttcattgtaccttctctttgcttcttttctacactctagtgcatactttatatggtttctgaactcacgttgcaaatcagcaacaaatttc |
10557134 |
T |
|
| Q |
316 |
aaagcatctttggttagaatttttgcaaactctgcatcatatcttcccctaacttcgacaccttctggtgcgtcgtagttagagatgatattctt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
10557133 |
aaagcatctttggttagaatttttgcaaactctgcatcatatcttcccctaacttcgacgccttctggtgcatcgtagttagagatgatattctt |
10557039 |
T |
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